Gene : Pavir.9NG293500 P. virgatum v4.1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  2706
Name:  ? Pavir.9NG293500 Secondary Identifier:  ? PAC:37654962
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY1F-FLAVSYN Panicum virgatum pathologic  
Pvirgatum PWY-6787 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.9NG293500 0.5kb upstream 0.5kb upstream 2683 true Chr09N: 31898825-31901507 Panicum virgatum
Pavir.9NG293500 0.5kb upstream 0.5kb upstream 500 false Chr09N: 31901008-31901507 Panicum virgatum
Pavir.9NG293500 0.5kb downstream 0.5kb downstream 2683 true Chr09N: 31898325-31901007 Panicum virgatum
Pavir.9NG293500 0.5kb downstream 0.5kb downstream 500 false Chr09N: 31898325-31898824 Panicum virgatum
Pavir.9NG293500 1.0kb upstream 1.0kb upstream 3183 true Chr09N: 31898825-31902007 Panicum virgatum
Pavir.9NG293500 1.0kb upstream 1.0kb upstream 1000 false Chr09N: 31901008-31902007 Panicum virgatum
Pavir.9NG293500 1.0kb downstream 1.0kb downstream 3183 true Chr09N: 31897825-31901007 Panicum virgatum
Pavir.9NG293500 1.0kb downstream 1.0kb downstream 1000 false Chr09N: 31897825-31898824 Panicum virgatum
Pavir.9NG293500 2.0kb upstream 2.0kb upstream 4183 true Chr09N: 31898825-31903007 Panicum virgatum
Pavir.9NG293500 2.0kb upstream 2.0kb upstream 2000 false Chr09N: 31901008-31903007 Panicum virgatum
Pavir.9NG293500 2.0kb downstream 2.0kb downstream 4183 true Chr09N: 31896825-31901007 Panicum virgatum
Pavir.9NG293500 2.0kb downstream 2.0kb downstream 2000 false Chr09N: 31896825-31898824 Panicum virgatum
Pavir.9NG293500 5.0kb upstream 5.0kb upstream 7183 true Chr09N: 31898825-31906007 Panicum virgatum
Pavir.9NG293500 5.0kb upstream 5.0kb upstream 5000 false Chr09N: 31901008-31906007 Panicum virgatum
Pavir.9NG293500 5.0kb downstream 5.0kb downstream 7183 true Chr09N: 31893825-31901007 Panicum virgatum
Pavir.9NG293500 5.0kb downstream 5.0kb downstream 5000 false Chr09N: 31893825-31898824 Panicum virgatum
Pavir.9NG293500 10.0kb upstream 10.0kb upstream 12183 true Chr09N: 31898825-31911007 Panicum virgatum
Pavir.9NG293500 10.0kb upstream 10.0kb upstream 10000 false Chr09N: 31901008-31911007 Panicum virgatum
Pavir.9NG293500 10.0kb downstream 10.0kb downstream 12183 true Chr09N: 31888825-31901007 Panicum virgatum
Pavir.9NG293500 10.0kb downstream 10.0kb downstream 10000 false Chr09N: 31888825-31898824 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179338 5267 Panicoideae View MSA
124568709 5269 Grass View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain