Gene : Thecc1EG025952 T. cacao v1.1
Defline:  (1 of 4) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  2522
Name:  ? Thecc1EG025952 Secondary Identifier:  ? PAC:27421942
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025952 0.5kb upstream 0.5kb upstream 5492 true scaffold_5: 35669501-35674992 Theobroma cacao
Thecc1EG025952 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35674493-35674992 Theobroma cacao
Thecc1EG025952 0.5kb downstream 0.5kb downstream 5492 true scaffold_5: 35669001-35674492 Theobroma cacao
Thecc1EG025952 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35669001-35669500 Theobroma cacao
Thecc1EG025952 1.0kb upstream 1.0kb upstream 5992 true scaffold_5: 35669501-35675492 Theobroma cacao
Thecc1EG025952 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35674493-35675492 Theobroma cacao
Thecc1EG025952 1.0kb downstream 1.0kb downstream 5992 true scaffold_5: 35668501-35674492 Theobroma cacao
Thecc1EG025952 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35668501-35669500 Theobroma cacao
Thecc1EG025952 2.0kb upstream 2.0kb upstream 6992 true scaffold_5: 35669501-35676492 Theobroma cacao
Thecc1EG025952 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35674493-35676492 Theobroma cacao
Thecc1EG025952 2.0kb downstream 2.0kb downstream 6992 true scaffold_5: 35667501-35674492 Theobroma cacao
Thecc1EG025952 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35667501-35669500 Theobroma cacao
Thecc1EG025952 5.0kb upstream 5.0kb upstream 9992 true scaffold_5: 35669501-35679492 Theobroma cacao
Thecc1EG025952 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35674493-35679492 Theobroma cacao
Thecc1EG025952 5.0kb downstream 5.0kb downstream 9992 true scaffold_5: 35664501-35674492 Theobroma cacao
Thecc1EG025952 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35664501-35669500 Theobroma cacao
Thecc1EG025952 10.0kb upstream 10.0kb upstream 14992 true scaffold_5: 35669501-35684492 Theobroma cacao
Thecc1EG025952 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35674493-35684492 Theobroma cacao
Thecc1EG025952 10.0kb downstream 10.0kb downstream 14992 true scaffold_5: 35659501-35674492 Theobroma cacao
Thecc1EG025952 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35659501-35669500 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840643 5264 Brassicales-Malvales View MSA
124345424 5266 SBM View MSA
124237184 5268 Malvidae View MSA
124066090 5270 Rosid View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain