Gene : Thecc1EG025943 T. cacao v1.1
Defline:  (1 of 1) KOG0978//KOG4593 - E3 ubiquitin ligase involved in syntaxin degradation // Mitotic checkpoint protein MAD1 Genomic Order:  2513
Name:  ? Thecc1EG025943 Secondary Identifier:  ? PAC:27423720
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025943 0.5kb upstream 0.5kb upstream 6354 true scaffold_5: 35620427-35626780 Theobroma cacao
Thecc1EG025943 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35626281-35626780 Theobroma cacao
Thecc1EG025943 0.5kb downstream 0.5kb downstream 6354 true scaffold_5: 35619927-35626280 Theobroma cacao
Thecc1EG025943 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35619927-35620426 Theobroma cacao
Thecc1EG025943 1.0kb upstream 1.0kb upstream 6854 true scaffold_5: 35620427-35627280 Theobroma cacao
Thecc1EG025943 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35626281-35627280 Theobroma cacao
Thecc1EG025943 1.0kb downstream 1.0kb downstream 6854 true scaffold_5: 35619427-35626280 Theobroma cacao
Thecc1EG025943 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35619427-35620426 Theobroma cacao
Thecc1EG025943 2.0kb upstream 2.0kb upstream 7854 true scaffold_5: 35620427-35628280 Theobroma cacao
Thecc1EG025943 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35626281-35628280 Theobroma cacao
Thecc1EG025943 2.0kb downstream 2.0kb downstream 7854 true scaffold_5: 35618427-35626280 Theobroma cacao
Thecc1EG025943 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35618427-35620426 Theobroma cacao
Thecc1EG025943 5.0kb upstream 5.0kb upstream 10854 true scaffold_5: 35620427-35631280 Theobroma cacao
Thecc1EG025943 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35626281-35631280 Theobroma cacao
Thecc1EG025943 5.0kb downstream 5.0kb downstream 10854 true scaffold_5: 35615427-35626280 Theobroma cacao
Thecc1EG025943 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35615427-35620426 Theobroma cacao
Thecc1EG025943 10.0kb upstream 10.0kb upstream 15854 true scaffold_5: 35620427-35636280 Theobroma cacao
Thecc1EG025943 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35626281-35636280 Theobroma cacao
Thecc1EG025943 10.0kb downstream 10.0kb downstream 15854 true scaffold_5: 35610427-35626280 Theobroma cacao
Thecc1EG025943 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35610427-35620426 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838109 5264 Brassicales-Malvales View MSA
124344107 5266 SBM View MSA
124252866 5268 Malvidae View MSA
124070954 5270 Rosid View MSA
123752761 5271 Pentapetalae View MSA
122774770 5272 Eudicot View MSA
122048785 5273 Angiosperm View MSA
121311111 5274 Embryophyte View MSA
123348454 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain