Gene : Pavir.6KG136300 P. virgatum v4.1
Defline:  (1 of 4) K10590 - E3 ubiquitin-protein ligase TRIP12 (TRIP12) Genomic Order:  1232
Name:  ? Pavir.6KG136300 Secondary Identifier:  ? PAC:37694586
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7511 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.6KG136300 0.5kb upstream 0.5kb upstream 9745 true Chr06K: 21453188-21462932 Panicum virgatum
Pavir.6KG136300 0.5kb upstream 0.5kb upstream 500 false Chr06K: 21453188-21453687 Panicum virgatum
Pavir.6KG136300 0.5kb downstream 0.5kb downstream 9745 true Chr06K: 21453688-21463432 Panicum virgatum
Pavir.6KG136300 0.5kb downstream 0.5kb downstream 500 false Chr06K: 21462933-21463432 Panicum virgatum
Pavir.6KG136300 1.0kb upstream 1.0kb upstream 10245 true Chr06K: 21452688-21462932 Panicum virgatum
Pavir.6KG136300 1.0kb upstream 1.0kb upstream 1000 false Chr06K: 21452688-21453687 Panicum virgatum
Pavir.6KG136300 1.0kb downstream 1.0kb downstream 10245 true Chr06K: 21453688-21463932 Panicum virgatum
Pavir.6KG136300 1.0kb downstream 1.0kb downstream 1000 false Chr06K: 21462933-21463932 Panicum virgatum
Pavir.6KG136300 2.0kb upstream 2.0kb upstream 11245 true Chr06K: 21451688-21462932 Panicum virgatum
Pavir.6KG136300 2.0kb upstream 2.0kb upstream 2000 false Chr06K: 21451688-21453687 Panicum virgatum
Pavir.6KG136300 2.0kb downstream 2.0kb downstream 11245 true Chr06K: 21453688-21464932 Panicum virgatum
Pavir.6KG136300 2.0kb downstream 2.0kb downstream 2000 false Chr06K: 21462933-21464932 Panicum virgatum
Pavir.6KG136300 5.0kb upstream 5.0kb upstream 14245 true Chr06K: 21448688-21462932 Panicum virgatum
Pavir.6KG136300 5.0kb upstream 5.0kb upstream 5000 false Chr06K: 21448688-21453687 Panicum virgatum
Pavir.6KG136300 5.0kb downstream 5.0kb downstream 14245 true Chr06K: 21453688-21467932 Panicum virgatum
Pavir.6KG136300 5.0kb downstream 5.0kb downstream 5000 false Chr06K: 21462933-21467932 Panicum virgatum
Pavir.6KG136300 10.0kb upstream 10.0kb upstream 19245 true Chr06K: 21443688-21462932 Panicum virgatum
Pavir.6KG136300 10.0kb upstream 10.0kb upstream 10000 false Chr06K: 21443688-21453687 Panicum virgatum
Pavir.6KG136300 10.0kb downstream 10.0kb downstream 19245 true Chr06K: 21453688-21472932 Panicum virgatum
Pavir.6KG136300 10.0kb downstream 10.0kb downstream 10000 false Chr06K: 21462933-21472932 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179694 5267 Panicoideae View MSA
124585478 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain