Gene : Pavir.1KG448500 P. virgatum v4.1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  4039
Name:  ? Pavir.1KG448500 Secondary Identifier:  ? PAC:37662722
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7560 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.1KG448500 0.5kb upstream 0.5kb upstream 3963 true Chr01K: 70321869-70325831 Panicum virgatum
Pavir.1KG448500 0.5kb upstream 0.5kb upstream 500 false Chr01K: 70325332-70325831 Panicum virgatum
Pavir.1KG448500 0.5kb downstream 0.5kb downstream 3963 true Chr01K: 70321369-70325331 Panicum virgatum
Pavir.1KG448500 0.5kb downstream 0.5kb downstream 500 false Chr01K: 70321369-70321868 Panicum virgatum
Pavir.1KG448500 1.0kb upstream 1.0kb upstream 4463 true Chr01K: 70321869-70326331 Panicum virgatum
Pavir.1KG448500 1.0kb upstream 1.0kb upstream 1000 false Chr01K: 70325332-70326331 Panicum virgatum
Pavir.1KG448500 1.0kb downstream 1.0kb downstream 4463 true Chr01K: 70320869-70325331 Panicum virgatum
Pavir.1KG448500 1.0kb downstream 1.0kb downstream 1000 false Chr01K: 70320869-70321868 Panicum virgatum
Pavir.1KG448500 2.0kb upstream 2.0kb upstream 5463 true Chr01K: 70321869-70327331 Panicum virgatum
Pavir.1KG448500 2.0kb upstream 2.0kb upstream 2000 false Chr01K: 70325332-70327331 Panicum virgatum
Pavir.1KG448500 2.0kb downstream 2.0kb downstream 5463 true Chr01K: 70319869-70325331 Panicum virgatum
Pavir.1KG448500 2.0kb downstream 2.0kb downstream 2000 false Chr01K: 70319869-70321868 Panicum virgatum
Pavir.1KG448500 5.0kb upstream 5.0kb upstream 8463 true Chr01K: 70321869-70330331 Panicum virgatum
Pavir.1KG448500 5.0kb upstream 5.0kb upstream 5000 false Chr01K: 70325332-70330331 Panicum virgatum
Pavir.1KG448500 5.0kb downstream 5.0kb downstream 8463 true Chr01K: 70316869-70325331 Panicum virgatum
Pavir.1KG448500 5.0kb downstream 5.0kb downstream 5000 false Chr01K: 70316869-70321868 Panicum virgatum
Pavir.1KG448500 10.0kb upstream 10.0kb upstream 13463 true Chr01K: 70321869-70335331 Panicum virgatum
Pavir.1KG448500 10.0kb upstream 10.0kb upstream 10000 false Chr01K: 70325332-70335331 Panicum virgatum
Pavir.1KG448500 10.0kb downstream 10.0kb downstream 13463 true Chr01K: 70311869-70325331 Panicum virgatum
Pavir.1KG448500 10.0kb downstream 10.0kb downstream 10000 false Chr01K: 70311869-70321868 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192729 5267 Panicoideae View MSA
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain