Gene : Pavir.7NG020800 P. virgatum v4.1
Defline:  (1 of 26) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  189
Name:  ? Pavir.7NG020800 Secondary Identifier:  ? PAC:37618383
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Expression

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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.7NG020800 0.5kb upstream 0.5kb upstream 3849 true Chr07N: 4443026-4446874 Panicum virgatum
Pavir.7NG020800 0.5kb upstream 0.5kb upstream 500 false Chr07N: 4443026-4443525 Panicum virgatum
Pavir.7NG020800 0.5kb downstream 0.5kb downstream 3849 true Chr07N: 4443526-4447374 Panicum virgatum
Pavir.7NG020800 0.5kb downstream 0.5kb downstream 500 false Chr07N: 4446875-4447374 Panicum virgatum
Pavir.7NG020800 1.0kb upstream 1.0kb upstream 4349 true Chr07N: 4442526-4446874 Panicum virgatum
Pavir.7NG020800 1.0kb upstream 1.0kb upstream 1000 false Chr07N: 4442526-4443525 Panicum virgatum
Pavir.7NG020800 1.0kb downstream 1.0kb downstream 4349 true Chr07N: 4443526-4447874 Panicum virgatum
Pavir.7NG020800 1.0kb downstream 1.0kb downstream 1000 false Chr07N: 4446875-4447874 Panicum virgatum
Pavir.7NG020800 2.0kb upstream 2.0kb upstream 5349 true Chr07N: 4441526-4446874 Panicum virgatum
Pavir.7NG020800 2.0kb upstream 2.0kb upstream 2000 false Chr07N: 4441526-4443525 Panicum virgatum
Pavir.7NG020800 2.0kb downstream 2.0kb downstream 5349 true Chr07N: 4443526-4448874 Panicum virgatum
Pavir.7NG020800 2.0kb downstream 2.0kb downstream 2000 false Chr07N: 4446875-4448874 Panicum virgatum
Pavir.7NG020800 5.0kb upstream 5.0kb upstream 8349 true Chr07N: 4438526-4446874 Panicum virgatum
Pavir.7NG020800 5.0kb upstream 5.0kb upstream 5000 false Chr07N: 4438526-4443525 Panicum virgatum
Pavir.7NG020800 5.0kb downstream 5.0kb downstream 8349 true Chr07N: 4443526-4451874 Panicum virgatum
Pavir.7NG020800 5.0kb downstream 5.0kb downstream 5000 false Chr07N: 4446875-4451874 Panicum virgatum
Pavir.7NG020800 10.0kb upstream 10.0kb upstream 13349 true Chr07N: 4433526-4446874 Panicum virgatum
Pavir.7NG020800 10.0kb upstream 10.0kb upstream 10000 false Chr07N: 4433526-4443525 Panicum virgatum
Pavir.7NG020800 10.0kb downstream 10.0kb downstream 13349 true Chr07N: 4443526-4456874 Panicum virgatum
Pavir.7NG020800 10.0kb downstream 10.0kb downstream 10000 false Chr07N: 4446875-4456874 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185269 5267 Panicoideae View MSA
124573617 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

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