Gene : Thecc1EG027814 T. cacao v1.1
Defline:  (1 of 3) PF03732//PF13975 - Retrotransposon gag protein (Retrotrans_gag) // gag-polyprotein putative aspartyl protease (gag-asp_proteas) Genomic Order:  578
Name:  ? Thecc1EG027814 Secondary Identifier:  ? PAC:27437541
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG027814 0.5kb upstream 0.5kb upstream 7065 true scaffold_6: 7542324-7549388 Theobroma cacao
Thecc1EG027814 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7542324-7542823 Theobroma cacao
Thecc1EG027814 0.5kb downstream 0.5kb downstream 7065 true scaffold_6: 7542824-7549888 Theobroma cacao
Thecc1EG027814 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7549389-7549888 Theobroma cacao
Thecc1EG027814 1.0kb upstream 1.0kb upstream 7565 true scaffold_6: 7541824-7549388 Theobroma cacao
Thecc1EG027814 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7541824-7542823 Theobroma cacao
Thecc1EG027814 1.0kb downstream 1.0kb downstream 7565 true scaffold_6: 7542824-7550388 Theobroma cacao
Thecc1EG027814 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7549389-7550388 Theobroma cacao
Thecc1EG027814 2.0kb upstream 2.0kb upstream 8565 true scaffold_6: 7540824-7549388 Theobroma cacao
Thecc1EG027814 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7540824-7542823 Theobroma cacao
Thecc1EG027814 2.0kb downstream 2.0kb downstream 8565 true scaffold_6: 7542824-7551388 Theobroma cacao
Thecc1EG027814 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7549389-7551388 Theobroma cacao
Thecc1EG027814 5.0kb upstream 5.0kb upstream 11565 true scaffold_6: 7537824-7549388 Theobroma cacao
Thecc1EG027814 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7537824-7542823 Theobroma cacao
Thecc1EG027814 5.0kb downstream 5.0kb downstream 11565 true scaffold_6: 7542824-7554388 Theobroma cacao
Thecc1EG027814 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7549389-7554388 Theobroma cacao
Thecc1EG027814 10.0kb upstream 10.0kb upstream 16565 true scaffold_6: 7532824-7549388 Theobroma cacao
Thecc1EG027814 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7532824-7542823 Theobroma cacao
Thecc1EG027814 10.0kb downstream 10.0kb downstream 16565 true scaffold_6: 7542824-7559388 Theobroma cacao
Thecc1EG027814 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7549389-7559388 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121524768 5273 Angiosperm View MSA
123823570 5264 Brassicales-Malvales View MSA
124319646 5266 SBM View MSA
124168177 5268 Malvidae View MSA
123891616 5270 Rosid View MSA
123473897 5271 Pentapetalae View MSA
122509181 5272 Eudicot View MSA
120797551 5274 Embryophyte View MSA
122839132 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain