Gene : Thecc1EG027755 T. cacao v1.1
Defline:  (1 of 1) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  551
Name:  ? Thecc1EG027755 Secondary Identifier:  ? PAC:27441053
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG027755 0.5kb upstream 0.5kb upstream 6144 true scaffold_6: 6941379-6947522 Theobroma cacao
Thecc1EG027755 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6947023-6947522 Theobroma cacao
Thecc1EG027755 0.5kb downstream 0.5kb downstream 6144 true scaffold_6: 6940879-6947022 Theobroma cacao
Thecc1EG027755 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6940879-6941378 Theobroma cacao
Thecc1EG027755 1.0kb upstream 1.0kb upstream 6644 true scaffold_6: 6941379-6948022 Theobroma cacao
Thecc1EG027755 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6947023-6948022 Theobroma cacao
Thecc1EG027755 1.0kb downstream 1.0kb downstream 6644 true scaffold_6: 6940379-6947022 Theobroma cacao
Thecc1EG027755 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6940379-6941378 Theobroma cacao
Thecc1EG027755 2.0kb upstream 2.0kb upstream 7644 true scaffold_6: 6941379-6949022 Theobroma cacao
Thecc1EG027755 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6947023-6949022 Theobroma cacao
Thecc1EG027755 2.0kb downstream 2.0kb downstream 7644 true scaffold_6: 6939379-6947022 Theobroma cacao
Thecc1EG027755 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6939379-6941378 Theobroma cacao
Thecc1EG027755 5.0kb upstream 5.0kb upstream 10644 true scaffold_6: 6941379-6952022 Theobroma cacao
Thecc1EG027755 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6947023-6952022 Theobroma cacao
Thecc1EG027755 5.0kb downstream 5.0kb downstream 10644 true scaffold_6: 6936379-6947022 Theobroma cacao
Thecc1EG027755 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6936379-6941378 Theobroma cacao
Thecc1EG027755 10.0kb upstream 10.0kb upstream 15644 true scaffold_6: 6941379-6957022 Theobroma cacao
Thecc1EG027755 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6947023-6957022 Theobroma cacao
Thecc1EG027755 10.0kb downstream 10.0kb downstream 15644 true scaffold_6: 6931379-6947022 Theobroma cacao
Thecc1EG027755 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6931379-6941378 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
123834214 5264 Brassicales-Malvales View MSA
124340654 5266 SBM View MSA
124239628 5268 Malvidae View MSA
124067853 5270 Rosid View MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain