Gene : Thecc1EG028279 T. cacao v1.1
Defline:  (1 of 39) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  708
Name:  ? Thecc1EG028279 Secondary Identifier:  ? PAC:27440695
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG028279 0.5kb upstream 0.5kb upstream 5810 true scaffold_6: 13225300-13231109 Theobroma cacao
Thecc1EG028279 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 13230610-13231109 Theobroma cacao
Thecc1EG028279 0.5kb downstream 0.5kb downstream 5810 true scaffold_6: 13224800-13230609 Theobroma cacao
Thecc1EG028279 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 13224800-13225299 Theobroma cacao
Thecc1EG028279 1.0kb upstream 1.0kb upstream 6310 true scaffold_6: 13225300-13231609 Theobroma cacao
Thecc1EG028279 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 13230610-13231609 Theobroma cacao
Thecc1EG028279 1.0kb downstream 1.0kb downstream 6310 true scaffold_6: 13224300-13230609 Theobroma cacao
Thecc1EG028279 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 13224300-13225299 Theobroma cacao
Thecc1EG028279 2.0kb upstream 2.0kb upstream 7310 true scaffold_6: 13225300-13232609 Theobroma cacao
Thecc1EG028279 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 13230610-13232609 Theobroma cacao
Thecc1EG028279 2.0kb downstream 2.0kb downstream 7310 true scaffold_6: 13223300-13230609 Theobroma cacao
Thecc1EG028279 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 13223300-13225299 Theobroma cacao
Thecc1EG028279 5.0kb upstream 5.0kb upstream 10310 true scaffold_6: 13225300-13235609 Theobroma cacao
Thecc1EG028279 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 13230610-13235609 Theobroma cacao
Thecc1EG028279 5.0kb downstream 5.0kb downstream 10310 true scaffold_6: 13220300-13230609 Theobroma cacao
Thecc1EG028279 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13220300-13225299 Theobroma cacao
Thecc1EG028279 10.0kb upstream 10.0kb upstream 15310 true scaffold_6: 13225300-13240609 Theobroma cacao
Thecc1EG028279 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 13230610-13240609 Theobroma cacao
Thecc1EG028279 10.0kb downstream 10.0kb downstream 15310 true scaffold_6: 13215300-13230609 Theobroma cacao
Thecc1EG028279 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13215300-13225299 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841126 5264 Brassicales-Malvales View MSA
124345334 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain