Gene : Thecc1EG029092 T. cacao v1.1
Defline:  (1 of 9) PF07727//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1161
Name:  ? Thecc1EG029092 Secondary Identifier:  ? PAC:27438680
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029092 0.5kb upstream 0.5kb upstream 4545 true scaffold_6: 20566653-20571197 Theobroma cacao
Thecc1EG029092 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 20566653-20567152 Theobroma cacao
Thecc1EG029092 0.5kb downstream 0.5kb downstream 4545 true scaffold_6: 20567153-20571697 Theobroma cacao
Thecc1EG029092 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 20571198-20571697 Theobroma cacao
Thecc1EG029092 1.0kb upstream 1.0kb upstream 5045 true scaffold_6: 20566153-20571197 Theobroma cacao
Thecc1EG029092 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 20566153-20567152 Theobroma cacao
Thecc1EG029092 1.0kb downstream 1.0kb downstream 5045 true scaffold_6: 20567153-20572197 Theobroma cacao
Thecc1EG029092 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 20571198-20572197 Theobroma cacao
Thecc1EG029092 2.0kb upstream 2.0kb upstream 6045 true scaffold_6: 20565153-20571197 Theobroma cacao
Thecc1EG029092 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 20565153-20567152 Theobroma cacao
Thecc1EG029092 2.0kb downstream 2.0kb downstream 6045 true scaffold_6: 20567153-20573197 Theobroma cacao
Thecc1EG029092 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 20571198-20573197 Theobroma cacao
Thecc1EG029092 5.0kb upstream 5.0kb upstream 9045 true scaffold_6: 20562153-20571197 Theobroma cacao
Thecc1EG029092 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 20562153-20567152 Theobroma cacao
Thecc1EG029092 5.0kb downstream 5.0kb downstream 9045 true scaffold_6: 20567153-20576197 Theobroma cacao
Thecc1EG029092 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 20571198-20576197 Theobroma cacao
Thecc1EG029092 10.0kb upstream 10.0kb upstream 14045 true scaffold_6: 20557153-20571197 Theobroma cacao
Thecc1EG029092 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 20557153-20567152 Theobroma cacao
Thecc1EG029092 10.0kb downstream 10.0kb downstream 14045 true scaffold_6: 20567153-20581197 Theobroma cacao
Thecc1EG029092 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 20571198-20581197 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121524929 5273 Angiosperm View MSA
123823868 5264 Brassicales-Malvales View MSA
124319922 5266 SBM View MSA
124168420 5268 Malvidae View MSA
123891813 5270 Rosid View MSA
123474067 5271 Pentapetalae View MSA
122509347 5272 Eudicot View MSA
120797710 5274 Embryophyte View MSA
122839289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain