Gene : Thecc1EG028965 T. cacao v1.1
Defline:  (1 of 1) PTHR11061//PTHR11061:SF30 - RNA M5U METHYLTRANSFERASE FAMILY // TRNA (URACIL(54)-C(5))-METHYLTRANSFERASE Genomic Order:  1050
Name:  ? Thecc1EG028965 Secondary Identifier:  ? PAC:27439144
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG028965 0.5kb upstream 0.5kb upstream 6687 true scaffold_6: 19719820-19726506 Theobroma cacao
Thecc1EG028965 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 19726007-19726506 Theobroma cacao
Thecc1EG028965 0.5kb downstream 0.5kb downstream 6687 true scaffold_6: 19719320-19726006 Theobroma cacao
Thecc1EG028965 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 19719320-19719819 Theobroma cacao
Thecc1EG028965 1.0kb upstream 1.0kb upstream 7187 true scaffold_6: 19719820-19727006 Theobroma cacao
Thecc1EG028965 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 19726007-19727006 Theobroma cacao
Thecc1EG028965 1.0kb downstream 1.0kb downstream 7187 true scaffold_6: 19718820-19726006 Theobroma cacao
Thecc1EG028965 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 19718820-19719819 Theobroma cacao
Thecc1EG028965 2.0kb upstream 2.0kb upstream 8187 true scaffold_6: 19719820-19728006 Theobroma cacao
Thecc1EG028965 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 19726007-19728006 Theobroma cacao
Thecc1EG028965 2.0kb downstream 2.0kb downstream 8187 true scaffold_6: 19717820-19726006 Theobroma cacao
Thecc1EG028965 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 19717820-19719819 Theobroma cacao
Thecc1EG028965 5.0kb upstream 5.0kb upstream 11187 true scaffold_6: 19719820-19731006 Theobroma cacao
Thecc1EG028965 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 19726007-19731006 Theobroma cacao
Thecc1EG028965 5.0kb downstream 5.0kb downstream 11187 true scaffold_6: 19714820-19726006 Theobroma cacao
Thecc1EG028965 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 19714820-19719819 Theobroma cacao
Thecc1EG028965 10.0kb upstream 10.0kb upstream 16187 true scaffold_6: 19719820-19736006 Theobroma cacao
Thecc1EG028965 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 19726007-19736006 Theobroma cacao
Thecc1EG028965 10.0kb downstream 10.0kb downstream 16187 true scaffold_6: 19709820-19726006 Theobroma cacao
Thecc1EG028965 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 19709820-19719819 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828162 5264 Brassicales-Malvales View MSA
124340624 5266 SBM View MSA
124241822 5268 Malvidae View MSA
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain