Gene : Thecc1EG029397 T. cacao v1.1
Defline:  (1 of 1) PTHR12042//PTHR12042:SF13 - LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1409
Name:  ? Thecc1EG029397 Secondary Identifier:  ? PAC:27439786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029397 0.5kb upstream 0.5kb upstream 5462 true scaffold_6: 22410896-22416357 Theobroma cacao
Thecc1EG029397 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 22415858-22416357 Theobroma cacao
Thecc1EG029397 0.5kb downstream 0.5kb downstream 5462 true scaffold_6: 22410396-22415857 Theobroma cacao
Thecc1EG029397 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 22410396-22410895 Theobroma cacao
Thecc1EG029397 1.0kb upstream 1.0kb upstream 5962 true scaffold_6: 22410896-22416857 Theobroma cacao
Thecc1EG029397 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 22415858-22416857 Theobroma cacao
Thecc1EG029397 1.0kb downstream 1.0kb downstream 5962 true scaffold_6: 22409896-22415857 Theobroma cacao
Thecc1EG029397 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 22409896-22410895 Theobroma cacao
Thecc1EG029397 2.0kb upstream 2.0kb upstream 6962 true scaffold_6: 22410896-22417857 Theobroma cacao
Thecc1EG029397 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 22415858-22417857 Theobroma cacao
Thecc1EG029397 2.0kb downstream 2.0kb downstream 6962 true scaffold_6: 22408896-22415857 Theobroma cacao
Thecc1EG029397 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 22408896-22410895 Theobroma cacao
Thecc1EG029397 5.0kb upstream 5.0kb upstream 9962 true scaffold_6: 22410896-22420857 Theobroma cacao
Thecc1EG029397 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 22415858-22420857 Theobroma cacao
Thecc1EG029397 5.0kb downstream 5.0kb downstream 9962 true scaffold_6: 22405896-22415857 Theobroma cacao
Thecc1EG029397 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 22405896-22410895 Theobroma cacao
Thecc1EG029397 10.0kb upstream 10.0kb upstream 14962 true scaffold_6: 22410896-22425857 Theobroma cacao
Thecc1EG029397 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 22415858-22425857 Theobroma cacao
Thecc1EG029397 10.0kb downstream 10.0kb downstream 14962 true scaffold_6: 22400896-22415857 Theobroma cacao
Thecc1EG029397 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 22400896-22410895 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836905 5264 Brassicales-Malvales View MSA
124346890 5266 SBM View MSA
124245543 5268 Malvidae View MSA
124070707 5270 Rosid View MSA
123741933 5271 Pentapetalae View MSA
122794617 5272 Eudicot View MSA
122048319 5273 Angiosperm View MSA
121348346 5274 Embryophyte View MSA
123380826 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain