Gene : Thecc1EG029861 T. cacao v1.1
Defline:  (1 of 2) PTHR11771//PTHR11771:SF38 - LIPOXYGENASE // LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  1823
Name:  ? Thecc1EG029861 Secondary Identifier:  ? PAC:27438371
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5409 Theobroma cacao pathologic  
Tcacao PWY-5410 Theobroma cacao pathologic  
Tcacao PWY-735 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029861 0.5kb upstream 0.5kb upstream 7087 true scaffold_6: 24663032-24670118 Theobroma cacao
Thecc1EG029861 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 24669619-24670118 Theobroma cacao
Thecc1EG029861 0.5kb downstream 0.5kb downstream 7087 true scaffold_6: 24662532-24669618 Theobroma cacao
Thecc1EG029861 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 24662532-24663031 Theobroma cacao
Thecc1EG029861 1.0kb upstream 1.0kb upstream 7587 true scaffold_6: 24663032-24670618 Theobroma cacao
Thecc1EG029861 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 24669619-24670618 Theobroma cacao
Thecc1EG029861 1.0kb downstream 1.0kb downstream 7587 true scaffold_6: 24662032-24669618 Theobroma cacao
Thecc1EG029861 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 24662032-24663031 Theobroma cacao
Thecc1EG029861 2.0kb upstream 2.0kb upstream 8587 true scaffold_6: 24663032-24671618 Theobroma cacao
Thecc1EG029861 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 24669619-24671618 Theobroma cacao
Thecc1EG029861 2.0kb downstream 2.0kb downstream 8587 true scaffold_6: 24661032-24669618 Theobroma cacao
Thecc1EG029861 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 24661032-24663031 Theobroma cacao
Thecc1EG029861 5.0kb upstream 5.0kb upstream 11587 true scaffold_6: 24663032-24674618 Theobroma cacao
Thecc1EG029861 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 24669619-24674618 Theobroma cacao
Thecc1EG029861 5.0kb downstream 5.0kb downstream 11587 true scaffold_6: 24658032-24669618 Theobroma cacao
Thecc1EG029861 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 24658032-24663031 Theobroma cacao
Thecc1EG029861 10.0kb upstream 10.0kb upstream 16587 true scaffold_6: 24663032-24679618 Theobroma cacao
Thecc1EG029861 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 24669619-24679618 Theobroma cacao
Thecc1EG029861 10.0kb downstream 10.0kb downstream 16587 true scaffold_6: 24653032-24669618 Theobroma cacao
Thecc1EG029861 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 24653032-24663031 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123842661 5264 Brassicales-Malvales View MSA
124323679 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain