Gene : Pavir.1NG126100 P. virgatum v4.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  1161
Name:  ? Pavir.1NG126100 Secondary Identifier:  ? PAC:37612979
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum GLYOXYLATE-BYPASS Panicum virgatum pathologic  
Pvirgatum PWY-5464 Panicum virgatum pathologic  
Pvirgatum PWY-561 Panicum virgatum pathologic  
Pvirgatum PWY-5690 Panicum virgatum pathologic  
Pvirgatum PWY-6549 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.1NG126100 0.5kb upstream 0.5kb upstream 5237 true Chr01N: 15733568-15738804 Panicum virgatum
Pavir.1NG126100 0.5kb upstream 0.5kb upstream 500 false Chr01N: 15738305-15738804 Panicum virgatum
Pavir.1NG126100 0.5kb downstream 0.5kb downstream 5237 true Chr01N: 15733068-15738304 Panicum virgatum
Pavir.1NG126100 0.5kb downstream 0.5kb downstream 500 false Chr01N: 15733068-15733567 Panicum virgatum
Pavir.1NG126100 1.0kb upstream 1.0kb upstream 5737 true Chr01N: 15733568-15739304 Panicum virgatum
Pavir.1NG126100 1.0kb upstream 1.0kb upstream 1000 false Chr01N: 15738305-15739304 Panicum virgatum
Pavir.1NG126100 1.0kb downstream 1.0kb downstream 5737 true Chr01N: 15732568-15738304 Panicum virgatum
Pavir.1NG126100 1.0kb downstream 1.0kb downstream 1000 false Chr01N: 15732568-15733567 Panicum virgatum
Pavir.1NG126100 2.0kb upstream 2.0kb upstream 6737 true Chr01N: 15733568-15740304 Panicum virgatum
Pavir.1NG126100 2.0kb upstream 2.0kb upstream 2000 false Chr01N: 15738305-15740304 Panicum virgatum
Pavir.1NG126100 2.0kb downstream 2.0kb downstream 6737 true Chr01N: 15731568-15738304 Panicum virgatum
Pavir.1NG126100 2.0kb downstream 2.0kb downstream 2000 false Chr01N: 15731568-15733567 Panicum virgatum
Pavir.1NG126100 5.0kb upstream 5.0kb upstream 9737 true Chr01N: 15733568-15743304 Panicum virgatum
Pavir.1NG126100 5.0kb upstream 5.0kb upstream 5000 false Chr01N: 15738305-15743304 Panicum virgatum
Pavir.1NG126100 5.0kb downstream 5.0kb downstream 9737 true Chr01N: 15728568-15738304 Panicum virgatum
Pavir.1NG126100 5.0kb downstream 5.0kb downstream 5000 false Chr01N: 15728568-15733567 Panicum virgatum
Pavir.1NG126100 10.0kb upstream 10.0kb upstream 14737 true Chr01N: 15733568-15748304 Panicum virgatum
Pavir.1NG126100 10.0kb upstream 10.0kb upstream 10000 false Chr01N: 15738305-15748304 Panicum virgatum
Pavir.1NG126100 10.0kb downstream 10.0kb downstream 14737 true Chr01N: 15723568-15738304 Panicum virgatum
Pavir.1NG126100 10.0kb downstream 10.0kb downstream 10000 false Chr01N: 15723568-15733567 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179324 5267 Panicoideae View MSA
124570333 5269 Grass View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain