Gene : Thecc1EG029978 T. cacao v1.1
Defline:  (1 of 1) K04718 - sphingosine kinase (SPHK) Genomic Order:  1928
Name:  ? Thecc1EG029978 Secondary Identifier:  ? PAC:27440040
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5129 Theobroma cacao pathologic  
Tcacao PWY-6483 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG029978 0.5kb upstream 0.5kb upstream 5361 true scaffold_6: 25246935-25252295 Theobroma cacao
Thecc1EG029978 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25251796-25252295 Theobroma cacao
Thecc1EG029978 0.5kb downstream 0.5kb downstream 5361 true scaffold_6: 25246435-25251795 Theobroma cacao
Thecc1EG029978 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25246435-25246934 Theobroma cacao
Thecc1EG029978 1.0kb upstream 1.0kb upstream 5861 true scaffold_6: 25246935-25252795 Theobroma cacao
Thecc1EG029978 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25251796-25252795 Theobroma cacao
Thecc1EG029978 1.0kb downstream 1.0kb downstream 5861 true scaffold_6: 25245935-25251795 Theobroma cacao
Thecc1EG029978 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25245935-25246934 Theobroma cacao
Thecc1EG029978 2.0kb upstream 2.0kb upstream 6861 true scaffold_6: 25246935-25253795 Theobroma cacao
Thecc1EG029978 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25251796-25253795 Theobroma cacao
Thecc1EG029978 2.0kb downstream 2.0kb downstream 6861 true scaffold_6: 25244935-25251795 Theobroma cacao
Thecc1EG029978 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25244935-25246934 Theobroma cacao
Thecc1EG029978 5.0kb upstream 5.0kb upstream 9861 true scaffold_6: 25246935-25256795 Theobroma cacao
Thecc1EG029978 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25251796-25256795 Theobroma cacao
Thecc1EG029978 5.0kb downstream 5.0kb downstream 9861 true scaffold_6: 25241935-25251795 Theobroma cacao
Thecc1EG029978 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25241935-25246934 Theobroma cacao
Thecc1EG029978 10.0kb upstream 10.0kb upstream 14861 true scaffold_6: 25246935-25261795 Theobroma cacao
Thecc1EG029978 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25251796-25261795 Theobroma cacao
Thecc1EG029978 10.0kb downstream 10.0kb downstream 14861 true scaffold_6: 25236935-25251795 Theobroma cacao
Thecc1EG029978 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25236935-25246934 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827390 5264 Brassicales-Malvales View MSA
124339583 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain