Gene : Pavir.1NG423100 P. virgatum v4.1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  3681
Name:  ? Pavir.1NG423100 Secondary Identifier:  ? PAC:37615884
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7560 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.1NG423100 0.5kb upstream 0.5kb upstream 7145 true Chr01N: 81786423-81793567 Panicum virgatum
Pavir.1NG423100 0.5kb upstream 0.5kb upstream 500 false Chr01N: 81793068-81793567 Panicum virgatum
Pavir.1NG423100 0.5kb downstream 0.5kb downstream 7145 true Chr01N: 81785923-81793067 Panicum virgatum
Pavir.1NG423100 0.5kb downstream 0.5kb downstream 500 false Chr01N: 81785923-81786422 Panicum virgatum
Pavir.1NG423100 1.0kb upstream 1.0kb upstream 7645 true Chr01N: 81786423-81794067 Panicum virgatum
Pavir.1NG423100 1.0kb upstream 1.0kb upstream 1000 false Chr01N: 81793068-81794067 Panicum virgatum
Pavir.1NG423100 1.0kb downstream 1.0kb downstream 7645 true Chr01N: 81785423-81793067 Panicum virgatum
Pavir.1NG423100 1.0kb downstream 1.0kb downstream 1000 false Chr01N: 81785423-81786422 Panicum virgatum
Pavir.1NG423100 2.0kb upstream 2.0kb upstream 8645 true Chr01N: 81786423-81795067 Panicum virgatum
Pavir.1NG423100 2.0kb upstream 2.0kb upstream 2000 false Chr01N: 81793068-81795067 Panicum virgatum
Pavir.1NG423100 2.0kb downstream 2.0kb downstream 8645 true Chr01N: 81784423-81793067 Panicum virgatum
Pavir.1NG423100 2.0kb downstream 2.0kb downstream 2000 false Chr01N: 81784423-81786422 Panicum virgatum
Pavir.1NG423100 5.0kb upstream 5.0kb upstream 11645 true Chr01N: 81786423-81798067 Panicum virgatum
Pavir.1NG423100 5.0kb upstream 5.0kb upstream 5000 false Chr01N: 81793068-81798067 Panicum virgatum
Pavir.1NG423100 5.0kb downstream 5.0kb downstream 11645 true Chr01N: 81781423-81793067 Panicum virgatum
Pavir.1NG423100 5.0kb downstream 5.0kb downstream 5000 false Chr01N: 81781423-81786422 Panicum virgatum
Pavir.1NG423100 10.0kb upstream 10.0kb upstream 16645 true Chr01N: 81786423-81803067 Panicum virgatum
Pavir.1NG423100 10.0kb upstream 10.0kb upstream 10000 false Chr01N: 81793068-81803067 Panicum virgatum
Pavir.1NG423100 10.0kb downstream 10.0kb downstream 16645 true Chr01N: 81776423-81793067 Panicum virgatum
Pavir.1NG423100 10.0kb downstream 10.0kb downstream 10000 false Chr01N: 81776423-81786422 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192729 5267 Panicoideae View MSA
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain