Gene : Thecc1EG030175 T. cacao v1.1
Defline:  (1 of 9) KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain Genomic Order:  2088
Name:  ? Thecc1EG030175 Secondary Identifier:  ? PAC:27440330
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030175 0.5kb upstream 0.5kb upstream 6254 true scaffold_6: 26074877-26081130 Theobroma cacao
Thecc1EG030175 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26074877-26075376 Theobroma cacao
Thecc1EG030175 0.5kb downstream 0.5kb downstream 6254 true scaffold_6: 26075377-26081630 Theobroma cacao
Thecc1EG030175 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26081131-26081630 Theobroma cacao
Thecc1EG030175 1.0kb upstream 1.0kb upstream 6754 true scaffold_6: 26074377-26081130 Theobroma cacao
Thecc1EG030175 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26074377-26075376 Theobroma cacao
Thecc1EG030175 1.0kb downstream 1.0kb downstream 6754 true scaffold_6: 26075377-26082130 Theobroma cacao
Thecc1EG030175 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26081131-26082130 Theobroma cacao
Thecc1EG030175 2.0kb upstream 2.0kb upstream 7754 true scaffold_6: 26073377-26081130 Theobroma cacao
Thecc1EG030175 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26073377-26075376 Theobroma cacao
Thecc1EG030175 2.0kb downstream 2.0kb downstream 7754 true scaffold_6: 26075377-26083130 Theobroma cacao
Thecc1EG030175 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26081131-26083130 Theobroma cacao
Thecc1EG030175 5.0kb upstream 5.0kb upstream 10754 true scaffold_6: 26070377-26081130 Theobroma cacao
Thecc1EG030175 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26070377-26075376 Theobroma cacao
Thecc1EG030175 5.0kb downstream 5.0kb downstream 10754 true scaffold_6: 26075377-26086130 Theobroma cacao
Thecc1EG030175 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26081131-26086130 Theobroma cacao
Thecc1EG030175 10.0kb upstream 10.0kb upstream 15754 true scaffold_6: 26065377-26081130 Theobroma cacao
Thecc1EG030175 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26065377-26075376 Theobroma cacao
Thecc1EG030175 10.0kb downstream 10.0kb downstream 15754 true scaffold_6: 26075377-26091130 Theobroma cacao
Thecc1EG030175 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26081131-26091130 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838055 5264 Brassicales-Malvales View MSA
124338505 5266 SBM View MSA
124240663 5268 Malvidae View MSA
124067525 5270 Rosid View MSA
123744207 5271 Pentapetalae View MSA
122795649 5272 Eudicot View MSA
122043712 5273 Angiosperm View MSA
121350910 5274 Embryophyte View MSA
123381934 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain