Gene : Pavir.1NG379200 P. virgatum v4.1
Defline:  (1 of 2) K01704 - 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit (leuD) Genomic Order:  3474
Name:  ? Pavir.1NG379200 Secondary Identifier:  ? PAC:37610282
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum BRANCHED-CHAIN-AA-SYN-PWY Panicum virgatum pathologic  
Pvirgatum LEUSYN-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.1NG379200 0.5kb upstream 0.5kb upstream 3524 true Chr01N: 77714748-77718271 Panicum virgatum
Pavir.1NG379200 0.5kb upstream 0.5kb upstream 500 false Chr01N: 77717772-77718271 Panicum virgatum
Pavir.1NG379200 0.5kb downstream 0.5kb downstream 3524 true Chr01N: 77714248-77717771 Panicum virgatum
Pavir.1NG379200 0.5kb downstream 0.5kb downstream 500 false Chr01N: 77714248-77714747 Panicum virgatum
Pavir.1NG379200 1.0kb upstream 1.0kb upstream 4024 true Chr01N: 77714748-77718771 Panicum virgatum
Pavir.1NG379200 1.0kb upstream 1.0kb upstream 1000 false Chr01N: 77717772-77718771 Panicum virgatum
Pavir.1NG379200 1.0kb downstream 1.0kb downstream 4024 true Chr01N: 77713748-77717771 Panicum virgatum
Pavir.1NG379200 1.0kb downstream 1.0kb downstream 1000 false Chr01N: 77713748-77714747 Panicum virgatum
Pavir.1NG379200 2.0kb upstream 2.0kb upstream 5024 true Chr01N: 77714748-77719771 Panicum virgatum
Pavir.1NG379200 2.0kb upstream 2.0kb upstream 2000 false Chr01N: 77717772-77719771 Panicum virgatum
Pavir.1NG379200 2.0kb downstream 2.0kb downstream 5024 true Chr01N: 77712748-77717771 Panicum virgatum
Pavir.1NG379200 2.0kb downstream 2.0kb downstream 2000 false Chr01N: 77712748-77714747 Panicum virgatum
Pavir.1NG379200 5.0kb upstream 5.0kb upstream 8024 true Chr01N: 77714748-77722771 Panicum virgatum
Pavir.1NG379200 5.0kb upstream 5.0kb upstream 5000 false Chr01N: 77717772-77722771 Panicum virgatum
Pavir.1NG379200 5.0kb downstream 5.0kb downstream 8024 true Chr01N: 77709748-77717771 Panicum virgatum
Pavir.1NG379200 5.0kb downstream 5.0kb downstream 5000 false Chr01N: 77709748-77714747 Panicum virgatum
Pavir.1NG379200 10.0kb upstream 10.0kb upstream 13024 true Chr01N: 77714748-77727771 Panicum virgatum
Pavir.1NG379200 10.0kb upstream 10.0kb upstream 10000 false Chr01N: 77717772-77727771 Panicum virgatum
Pavir.1NG379200 10.0kb downstream 10.0kb downstream 13024 true Chr01N: 77704748-77717771 Panicum virgatum
Pavir.1NG379200 10.0kb downstream 10.0kb downstream 10000 false Chr01N: 77704748-77714747 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122088465 5267 Panicoideae Singleton cluster - no MSA
124584130 5269 Grass View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain