Gene : Thecc1EG030331 T. cacao v1.1
Defline:  (1 of 8) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2233
Name:  ? Thecc1EG030331 Secondary Identifier:  ? PAC:27438795
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030331 0.5kb upstream 0.5kb upstream 2418 true scaffold_6: 26695141-26697558 Theobroma cacao
Thecc1EG030331 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26695141-26695640 Theobroma cacao
Thecc1EG030331 0.5kb downstream 0.5kb downstream 2418 true scaffold_6: 26695641-26698058 Theobroma cacao
Thecc1EG030331 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26697559-26698058 Theobroma cacao
Thecc1EG030331 1.0kb upstream 1.0kb upstream 2918 true scaffold_6: 26694641-26697558 Theobroma cacao
Thecc1EG030331 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26694641-26695640 Theobroma cacao
Thecc1EG030331 1.0kb downstream 1.0kb downstream 2918 true scaffold_6: 26695641-26698558 Theobroma cacao
Thecc1EG030331 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26697559-26698558 Theobroma cacao
Thecc1EG030331 2.0kb upstream 2.0kb upstream 3918 true scaffold_6: 26693641-26697558 Theobroma cacao
Thecc1EG030331 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26693641-26695640 Theobroma cacao
Thecc1EG030331 2.0kb downstream 2.0kb downstream 3918 true scaffold_6: 26695641-26699558 Theobroma cacao
Thecc1EG030331 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26697559-26699558 Theobroma cacao
Thecc1EG030331 5.0kb upstream 5.0kb upstream 6918 true scaffold_6: 26690641-26697558 Theobroma cacao
Thecc1EG030331 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26690641-26695640 Theobroma cacao
Thecc1EG030331 5.0kb downstream 5.0kb downstream 6918 true scaffold_6: 26695641-26702558 Theobroma cacao
Thecc1EG030331 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26697559-26702558 Theobroma cacao
Thecc1EG030331 10.0kb upstream 10.0kb upstream 11918 true scaffold_6: 26685641-26697558 Theobroma cacao
Thecc1EG030331 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26685641-26695640 Theobroma cacao
Thecc1EG030331 10.0kb downstream 10.0kb downstream 11918 true scaffold_6: 26695641-26707558 Theobroma cacao
Thecc1EG030331 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26697559-26707558 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123820960 5264 Brassicales-Malvales Singleton cluster - no MSA
124317154 5266 SBM Singleton cluster - no MSA
124250408 5268 Malvidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain