Gene : Pavir.J635400 P. virgatum v4.1
Defline:  (1 of 26) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1
Name:  ? Pavir.J635400 Secondary Identifier:  ? PAC:37602253
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.J635400 0.5kb upstream 0.5kb upstream 5378 true scaffold_6403: 155-5532 Panicum virgatum
Pavir.J635400 0.5kb upstream 0.5kb upstream 500 false scaffold_6403: 5033-5532 Panicum virgatum
Pavir.J635400 0.5kb downstream 0.5kb downstream 5032 true scaffold_6403: 1-5032 Panicum virgatum
Pavir.J635400 0.5kb downstream 0.5kb downstream 154 false scaffold_6403: 1-154 Panicum virgatum
Pavir.J635400 1.0kb upstream 1.0kb upstream 5878 true scaffold_6403: 155-6032 Panicum virgatum
Pavir.J635400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6403: 5033-6032 Panicum virgatum
Pavir.J635400 1.0kb downstream 1.0kb downstream 5032 true scaffold_6403: 1-5032 Panicum virgatum
Pavir.J635400 1.0kb downstream 1.0kb downstream 154 false scaffold_6403: 1-154 Panicum virgatum
Pavir.J635400 2.0kb upstream 2.0kb upstream 6878 true scaffold_6403: 155-7032 Panicum virgatum
Pavir.J635400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6403: 5033-7032 Panicum virgatum
Pavir.J635400 2.0kb downstream 2.0kb downstream 5032 true scaffold_6403: 1-5032 Panicum virgatum
Pavir.J635400 2.0kb downstream 2.0kb downstream 154 false scaffold_6403: 1-154 Panicum virgatum
Pavir.J635400 5.0kb upstream 5.0kb upstream 9124 true scaffold_6403: 155-9278 Panicum virgatum
Pavir.J635400 5.0kb upstream 5.0kb upstream 4246 false scaffold_6403: 5033-9278 Panicum virgatum
Pavir.J635400 5.0kb downstream 5.0kb downstream 5032 true scaffold_6403: 1-5032 Panicum virgatum
Pavir.J635400 5.0kb downstream 5.0kb downstream 154 false scaffold_6403: 1-154 Panicum virgatum
Pavir.J635400 10.0kb upstream 10.0kb upstream 9124 true scaffold_6403: 155-9278 Panicum virgatum
Pavir.J635400 10.0kb upstream 10.0kb upstream 4246 false scaffold_6403: 5033-9278 Panicum virgatum
Pavir.J635400 10.0kb downstream 10.0kb downstream 5032 true scaffold_6403: 1-5032 Panicum virgatum
Pavir.J635400 10.0kb downstream 10.0kb downstream 154 false scaffold_6403: 1-154 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178967 5267 Panicoideae View MSA
124571390 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain