Gene : Thecc1EG030285 T. cacao v1.1
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  2190
Name:  ? Thecc1EG030285 Secondary Identifier:  ? PAC:27439463
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030285 0.5kb upstream 0.5kb upstream 8100 true scaffold_6: 26506559-26514658 Theobroma cacao
Thecc1EG030285 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26514159-26514658 Theobroma cacao
Thecc1EG030285 0.5kb downstream 0.5kb downstream 8100 true scaffold_6: 26506059-26514158 Theobroma cacao
Thecc1EG030285 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26506059-26506558 Theobroma cacao
Thecc1EG030285 1.0kb upstream 1.0kb upstream 8600 true scaffold_6: 26506559-26515158 Theobroma cacao
Thecc1EG030285 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26514159-26515158 Theobroma cacao
Thecc1EG030285 1.0kb downstream 1.0kb downstream 8600 true scaffold_6: 26505559-26514158 Theobroma cacao
Thecc1EG030285 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26505559-26506558 Theobroma cacao
Thecc1EG030285 2.0kb upstream 2.0kb upstream 9600 true scaffold_6: 26506559-26516158 Theobroma cacao
Thecc1EG030285 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26514159-26516158 Theobroma cacao
Thecc1EG030285 2.0kb downstream 2.0kb downstream 9600 true scaffold_6: 26504559-26514158 Theobroma cacao
Thecc1EG030285 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26504559-26506558 Theobroma cacao
Thecc1EG030285 5.0kb upstream 5.0kb upstream 12600 true scaffold_6: 26506559-26519158 Theobroma cacao
Thecc1EG030285 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26514159-26519158 Theobroma cacao
Thecc1EG030285 5.0kb downstream 5.0kb downstream 12600 true scaffold_6: 26501559-26514158 Theobroma cacao
Thecc1EG030285 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26501559-26506558 Theobroma cacao
Thecc1EG030285 10.0kb upstream 10.0kb upstream 17600 true scaffold_6: 26506559-26524158 Theobroma cacao
Thecc1EG030285 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26514159-26524158 Theobroma cacao
Thecc1EG030285 10.0kb downstream 10.0kb downstream 17600 true scaffold_6: 26496559-26514158 Theobroma cacao
Thecc1EG030285 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26496559-26506558 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
123829481 5264 Brassicales-Malvales View MSA
124336430 5266 SBM View MSA
124239362 5268 Malvidae View MSA
124073421 5270 Rosid View MSA
123749958 5271 Pentapetalae View MSA
122789048 5272 Eudicot View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain