Gene : Thecc1EG030422 T. cacao v1.1
Defline:  (1 of 4) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2308
Name:  ? Thecc1EG030422 Secondary Identifier:  ? PAC:27438533
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030422 0.5kb upstream 0.5kb upstream 3744 true scaffold_6: 26979636-26983379 Theobroma cacao
Thecc1EG030422 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26982880-26983379 Theobroma cacao
Thecc1EG030422 0.5kb downstream 0.5kb downstream 3744 true scaffold_6: 26979136-26982879 Theobroma cacao
Thecc1EG030422 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26979136-26979635 Theobroma cacao
Thecc1EG030422 1.0kb upstream 1.0kb upstream 4244 true scaffold_6: 26979636-26983879 Theobroma cacao
Thecc1EG030422 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26982880-26983879 Theobroma cacao
Thecc1EG030422 1.0kb downstream 1.0kb downstream 4244 true scaffold_6: 26978636-26982879 Theobroma cacao
Thecc1EG030422 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26978636-26979635 Theobroma cacao
Thecc1EG030422 2.0kb upstream 2.0kb upstream 5244 true scaffold_6: 26979636-26984879 Theobroma cacao
Thecc1EG030422 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26982880-26984879 Theobroma cacao
Thecc1EG030422 2.0kb downstream 2.0kb downstream 5244 true scaffold_6: 26977636-26982879 Theobroma cacao
Thecc1EG030422 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26977636-26979635 Theobroma cacao
Thecc1EG030422 5.0kb upstream 5.0kb upstream 8244 true scaffold_6: 26979636-26987879 Theobroma cacao
Thecc1EG030422 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26982880-26987879 Theobroma cacao
Thecc1EG030422 5.0kb downstream 5.0kb downstream 8244 true scaffold_6: 26974636-26982879 Theobroma cacao
Thecc1EG030422 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26974636-26979635 Theobroma cacao
Thecc1EG030422 10.0kb upstream 10.0kb upstream 13244 true scaffold_6: 26979636-26992879 Theobroma cacao
Thecc1EG030422 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26982880-26992879 Theobroma cacao
Thecc1EG030422 10.0kb downstream 10.0kb downstream 13244 true scaffold_6: 26969636-26982879 Theobroma cacao
Thecc1EG030422 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26969636-26979635 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839281 5264 Brassicales-Malvales View MSA
124340689 5266 SBM View MSA
124240130 5268 Malvidae View MSA
124064149 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain