Gene : Thecc1EG030406 T. cacao v1.1
Defline:  (1 of 2) PTHR23416//PTHR23416:SF56 - SIALIC ACID SYNTHASE-RELATED // SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2295
Name:  ? Thecc1EG030406 Secondary Identifier:  ? PAC:27438442
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CYSTSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-6936 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030406 0.5kb upstream 0.5kb upstream 1830 true scaffold_6: 26930359-26932188 Theobroma cacao
Thecc1EG030406 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 26931689-26932188 Theobroma cacao
Thecc1EG030406 0.5kb downstream 0.5kb downstream 1830 true scaffold_6: 26929859-26931688 Theobroma cacao
Thecc1EG030406 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 26929859-26930358 Theobroma cacao
Thecc1EG030406 1.0kb upstream 1.0kb upstream 2330 true scaffold_6: 26930359-26932688 Theobroma cacao
Thecc1EG030406 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 26931689-26932688 Theobroma cacao
Thecc1EG030406 1.0kb downstream 1.0kb downstream 2330 true scaffold_6: 26929359-26931688 Theobroma cacao
Thecc1EG030406 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 26929359-26930358 Theobroma cacao
Thecc1EG030406 2.0kb upstream 2.0kb upstream 3330 true scaffold_6: 26930359-26933688 Theobroma cacao
Thecc1EG030406 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 26931689-26933688 Theobroma cacao
Thecc1EG030406 2.0kb downstream 2.0kb downstream 3330 true scaffold_6: 26928359-26931688 Theobroma cacao
Thecc1EG030406 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 26928359-26930358 Theobroma cacao
Thecc1EG030406 5.0kb upstream 5.0kb upstream 6330 true scaffold_6: 26930359-26936688 Theobroma cacao
Thecc1EG030406 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 26931689-26936688 Theobroma cacao
Thecc1EG030406 5.0kb downstream 5.0kb downstream 6330 true scaffold_6: 26925359-26931688 Theobroma cacao
Thecc1EG030406 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 26925359-26930358 Theobroma cacao
Thecc1EG030406 10.0kb upstream 10.0kb upstream 11330 true scaffold_6: 26930359-26941688 Theobroma cacao
Thecc1EG030406 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 26931689-26941688 Theobroma cacao
Thecc1EG030406 10.0kb downstream 10.0kb downstream 11330 true scaffold_6: 26920359-26931688 Theobroma cacao
Thecc1EG030406 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 26920359-26930358 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835018 5264 Brassicales-Malvales View MSA
124338786 5266 SBM View MSA
124238162 5268 Malvidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain