Gene : Thecc1EG030977 T. cacao v1.1
Defline:  (1 of 1) PTHR10314//PTHR10314:SF98 - SER/THR DEHYDRATASE, TRP SYNTHASE // TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  434
Name:  ? Thecc1EG030977 Secondary Identifier:  ? PAC:27445471
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6949 Theobroma cacao pathologic  
Tcacao TRPSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030977 0.5kb upstream 0.5kb upstream 4599 true scaffold_7: 2325302-2329900 Theobroma cacao
Thecc1EG030977 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 2325302-2325801 Theobroma cacao
Thecc1EG030977 0.5kb downstream 0.5kb downstream 4599 true scaffold_7: 2325802-2330400 Theobroma cacao
Thecc1EG030977 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 2329901-2330400 Theobroma cacao
Thecc1EG030977 1.0kb upstream 1.0kb upstream 5099 true scaffold_7: 2324802-2329900 Theobroma cacao
Thecc1EG030977 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 2324802-2325801 Theobroma cacao
Thecc1EG030977 1.0kb downstream 1.0kb downstream 5099 true scaffold_7: 2325802-2330900 Theobroma cacao
Thecc1EG030977 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 2329901-2330900 Theobroma cacao
Thecc1EG030977 2.0kb upstream 2.0kb upstream 6099 true scaffold_7: 2323802-2329900 Theobroma cacao
Thecc1EG030977 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 2323802-2325801 Theobroma cacao
Thecc1EG030977 2.0kb downstream 2.0kb downstream 6099 true scaffold_7: 2325802-2331900 Theobroma cacao
Thecc1EG030977 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 2329901-2331900 Theobroma cacao
Thecc1EG030977 5.0kb upstream 5.0kb upstream 9099 true scaffold_7: 2320802-2329900 Theobroma cacao
Thecc1EG030977 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 2320802-2325801 Theobroma cacao
Thecc1EG030977 5.0kb downstream 5.0kb downstream 9099 true scaffold_7: 2325802-2334900 Theobroma cacao
Thecc1EG030977 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 2329901-2334900 Theobroma cacao
Thecc1EG030977 10.0kb upstream 10.0kb upstream 14099 true scaffold_7: 2315802-2329900 Theobroma cacao
Thecc1EG030977 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 2315802-2325801 Theobroma cacao
Thecc1EG030977 10.0kb downstream 10.0kb downstream 14099 true scaffold_7: 2325802-2339900 Theobroma cacao
Thecc1EG030977 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 2329901-2339900 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837173 5264 Brassicales-Malvales View MSA
124344388 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain