Gene : Pavir.3NG134400 P. virgatum v4.1
Defline:  (1 of 4) K00949 - thiamine pyrophosphokinase (thiN, TPK1, THI80) Genomic Order:  1233
Name:  ? Pavir.3NG134400 Secondary Identifier:  ? PAC:37643952
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-6908 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.3NG134400 0.5kb upstream 0.5kb upstream 3448 true Chr03N: 17017903-17021350 Panicum virgatum
Pavir.3NG134400 0.5kb upstream 0.5kb upstream 500 false Chr03N: 17017903-17018402 Panicum virgatum
Pavir.3NG134400 0.5kb downstream 0.5kb downstream 3448 true Chr03N: 17018403-17021850 Panicum virgatum
Pavir.3NG134400 0.5kb downstream 0.5kb downstream 500 false Chr03N: 17021351-17021850 Panicum virgatum
Pavir.3NG134400 1.0kb upstream 1.0kb upstream 3948 true Chr03N: 17017403-17021350 Panicum virgatum
Pavir.3NG134400 1.0kb upstream 1.0kb upstream 1000 false Chr03N: 17017403-17018402 Panicum virgatum
Pavir.3NG134400 1.0kb downstream 1.0kb downstream 3948 true Chr03N: 17018403-17022350 Panicum virgatum
Pavir.3NG134400 1.0kb downstream 1.0kb downstream 1000 false Chr03N: 17021351-17022350 Panicum virgatum
Pavir.3NG134400 2.0kb upstream 2.0kb upstream 4948 true Chr03N: 17016403-17021350 Panicum virgatum
Pavir.3NG134400 2.0kb upstream 2.0kb upstream 2000 false Chr03N: 17016403-17018402 Panicum virgatum
Pavir.3NG134400 2.0kb downstream 2.0kb downstream 4948 true Chr03N: 17018403-17023350 Panicum virgatum
Pavir.3NG134400 2.0kb downstream 2.0kb downstream 2000 false Chr03N: 17021351-17023350 Panicum virgatum
Pavir.3NG134400 5.0kb upstream 5.0kb upstream 7948 true Chr03N: 17013403-17021350 Panicum virgatum
Pavir.3NG134400 5.0kb upstream 5.0kb upstream 5000 false Chr03N: 17013403-17018402 Panicum virgatum
Pavir.3NG134400 5.0kb downstream 5.0kb downstream 7948 true Chr03N: 17018403-17026350 Panicum virgatum
Pavir.3NG134400 5.0kb downstream 5.0kb downstream 5000 false Chr03N: 17021351-17026350 Panicum virgatum
Pavir.3NG134400 10.0kb upstream 10.0kb upstream 12948 true Chr03N: 17008403-17021350 Panicum virgatum
Pavir.3NG134400 10.0kb upstream 10.0kb upstream 10000 false Chr03N: 17008403-17018402 Panicum virgatum
Pavir.3NG134400 10.0kb downstream 10.0kb downstream 12948 true Chr03N: 17018403-17031350 Panicum virgatum
Pavir.3NG134400 10.0kb downstream 10.0kb downstream 10000 false Chr03N: 17021351-17031350 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177462 5267 Panicoideae View MSA
124570032 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain