Gene : Thecc1EG031717 T. cacao v1.1
Defline:  (1 of 1) PTHR11088//PTHR11088:SF31 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // TRNA DIMETHYLALLYLTRANSFERASE 9 Genomic Order:  982
Name:  ? Thecc1EG031717 Secondary Identifier:  ? PAC:27445423
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-2781 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG031717 0.5kb upstream 0.5kb upstream 11128 true scaffold_7: 6473344-6484471 Theobroma cacao
Thecc1EG031717 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6483972-6484471 Theobroma cacao
Thecc1EG031717 0.5kb downstream 0.5kb downstream 11128 true scaffold_7: 6472844-6483971 Theobroma cacao
Thecc1EG031717 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6472844-6473343 Theobroma cacao
Thecc1EG031717 1.0kb upstream 1.0kb upstream 11628 true scaffold_7: 6473344-6484971 Theobroma cacao
Thecc1EG031717 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6483972-6484971 Theobroma cacao
Thecc1EG031717 1.0kb downstream 1.0kb downstream 11628 true scaffold_7: 6472344-6483971 Theobroma cacao
Thecc1EG031717 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6472344-6473343 Theobroma cacao
Thecc1EG031717 2.0kb upstream 2.0kb upstream 12628 true scaffold_7: 6473344-6485971 Theobroma cacao
Thecc1EG031717 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6483972-6485971 Theobroma cacao
Thecc1EG031717 2.0kb downstream 2.0kb downstream 12628 true scaffold_7: 6471344-6483971 Theobroma cacao
Thecc1EG031717 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6471344-6473343 Theobroma cacao
Thecc1EG031717 5.0kb upstream 5.0kb upstream 15628 true scaffold_7: 6473344-6488971 Theobroma cacao
Thecc1EG031717 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6483972-6488971 Theobroma cacao
Thecc1EG031717 5.0kb downstream 5.0kb downstream 15628 true scaffold_7: 6468344-6483971 Theobroma cacao
Thecc1EG031717 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6468344-6473343 Theobroma cacao
Thecc1EG031717 10.0kb upstream 10.0kb upstream 20628 true scaffold_7: 6473344-6493971 Theobroma cacao
Thecc1EG031717 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6483972-6493971 Theobroma cacao
Thecc1EG031717 10.0kb downstream 10.0kb downstream 20628 true scaffold_7: 6463344-6483971 Theobroma cacao
Thecc1EG031717 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6463344-6473343 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831177 5264 Brassicales-Malvales View MSA
124343005 5266 SBM View MSA
124240666 5268 Malvidae View MSA
124066214 5270 Rosid View MSA
123738978 5271 Pentapetalae View MSA
122792264 5272 Eudicot View MSA
122047791 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain