Gene : Pavir.4KG050400 P. virgatum v4.1
Defline:  (1 of 2) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  467
Name:  ? Pavir.4KG050400 Secondary Identifier:  ? PAC:37604874
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum GLYCOGENSYNTH-PWY Panicum virgatum pathologic  
Pvirgatum PWY-622 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.4KG050400 0.5kb upstream 0.5kb upstream 7737 true Chr04K: 4706059-4713795 Panicum virgatum
Pavir.4KG050400 0.5kb upstream 0.5kb upstream 500 false Chr04K: 4713296-4713795 Panicum virgatum
Pavir.4KG050400 0.5kb downstream 0.5kb downstream 7737 true Chr04K: 4705559-4713295 Panicum virgatum
Pavir.4KG050400 0.5kb downstream 0.5kb downstream 500 false Chr04K: 4705559-4706058 Panicum virgatum
Pavir.4KG050400 1.0kb upstream 1.0kb upstream 8237 true Chr04K: 4706059-4714295 Panicum virgatum
Pavir.4KG050400 1.0kb upstream 1.0kb upstream 1000 false Chr04K: 4713296-4714295 Panicum virgatum
Pavir.4KG050400 1.0kb downstream 1.0kb downstream 8237 true Chr04K: 4705059-4713295 Panicum virgatum
Pavir.4KG050400 1.0kb downstream 1.0kb downstream 1000 false Chr04K: 4705059-4706058 Panicum virgatum
Pavir.4KG050400 2.0kb upstream 2.0kb upstream 9237 true Chr04K: 4706059-4715295 Panicum virgatum
Pavir.4KG050400 2.0kb upstream 2.0kb upstream 2000 false Chr04K: 4713296-4715295 Panicum virgatum
Pavir.4KG050400 2.0kb downstream 2.0kb downstream 9237 true Chr04K: 4704059-4713295 Panicum virgatum
Pavir.4KG050400 2.0kb downstream 2.0kb downstream 2000 false Chr04K: 4704059-4706058 Panicum virgatum
Pavir.4KG050400 5.0kb upstream 5.0kb upstream 12237 true Chr04K: 4706059-4718295 Panicum virgatum
Pavir.4KG050400 5.0kb upstream 5.0kb upstream 5000 false Chr04K: 4713296-4718295 Panicum virgatum
Pavir.4KG050400 5.0kb downstream 5.0kb downstream 12237 true Chr04K: 4701059-4713295 Panicum virgatum
Pavir.4KG050400 5.0kb downstream 5.0kb downstream 5000 false Chr04K: 4701059-4706058 Panicum virgatum
Pavir.4KG050400 10.0kb upstream 10.0kb upstream 17237 true Chr04K: 4706059-4723295 Panicum virgatum
Pavir.4KG050400 10.0kb upstream 10.0kb upstream 10000 false Chr04K: 4713296-4723295 Panicum virgatum
Pavir.4KG050400 10.0kb downstream 10.0kb downstream 17237 true Chr04K: 4696059-4713295 Panicum virgatum
Pavir.4KG050400 10.0kb downstream 10.0kb downstream 10000 false Chr04K: 4696059-4706058 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186416 5267 Panicoideae View MSA
124573118 5269 Grass View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain