Gene : Pavir.4KG153200 P. virgatum v4.1
Defline:  (1 of 2) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  1630
Name:  ? Pavir.4KG153200 Secondary Identifier:  ? PAC:37606538
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum GLYSYN-PWY Panicum virgatum pathologic  
Pvirgatum PWY-2161 Panicum virgatum pathologic  
Pvirgatum PWY-3841 Panicum virgatum pathologic  
Pvirgatum SER-GLYSYN-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.4KG153200 0.5kb upstream 0.5kb upstream 5245 true Chr04K: 26028244-26033488 Panicum virgatum
Pavir.4KG153200 0.5kb upstream 0.5kb upstream 500 false Chr04K: 26028244-26028743 Panicum virgatum
Pavir.4KG153200 0.5kb downstream 0.5kb downstream 5245 true Chr04K: 26028744-26033988 Panicum virgatum
Pavir.4KG153200 0.5kb downstream 0.5kb downstream 500 false Chr04K: 26033489-26033988 Panicum virgatum
Pavir.4KG153200 1.0kb upstream 1.0kb upstream 5745 true Chr04K: 26027744-26033488 Panicum virgatum
Pavir.4KG153200 1.0kb upstream 1.0kb upstream 1000 false Chr04K: 26027744-26028743 Panicum virgatum
Pavir.4KG153200 1.0kb downstream 1.0kb downstream 5745 true Chr04K: 26028744-26034488 Panicum virgatum
Pavir.4KG153200 1.0kb downstream 1.0kb downstream 1000 false Chr04K: 26033489-26034488 Panicum virgatum
Pavir.4KG153200 2.0kb upstream 2.0kb upstream 6745 true Chr04K: 26026744-26033488 Panicum virgatum
Pavir.4KG153200 2.0kb upstream 2.0kb upstream 2000 false Chr04K: 26026744-26028743 Panicum virgatum
Pavir.4KG153200 2.0kb downstream 2.0kb downstream 6745 true Chr04K: 26028744-26035488 Panicum virgatum
Pavir.4KG153200 2.0kb downstream 2.0kb downstream 2000 false Chr04K: 26033489-26035488 Panicum virgatum
Pavir.4KG153200 5.0kb upstream 5.0kb upstream 9745 true Chr04K: 26023744-26033488 Panicum virgatum
Pavir.4KG153200 5.0kb upstream 5.0kb upstream 5000 false Chr04K: 26023744-26028743 Panicum virgatum
Pavir.4KG153200 5.0kb downstream 5.0kb downstream 9745 true Chr04K: 26028744-26038488 Panicum virgatum
Pavir.4KG153200 5.0kb downstream 5.0kb downstream 5000 false Chr04K: 26033489-26038488 Panicum virgatum
Pavir.4KG153200 10.0kb upstream 10.0kb upstream 14745 true Chr04K: 26018744-26033488 Panicum virgatum
Pavir.4KG153200 10.0kb upstream 10.0kb upstream 10000 false Chr04K: 26018744-26028743 Panicum virgatum
Pavir.4KG153200 10.0kb downstream 10.0kb downstream 14745 true Chr04K: 26028744-26043488 Panicum virgatum
Pavir.4KG153200 10.0kb downstream 10.0kb downstream 10000 false Chr04K: 26033489-26043488 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187926 5267 Panicoideae View MSA
124570013 5269 Grass View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain