Gene : Thecc1EG031797 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  1041
Name:  ? Thecc1EG031797 Secondary Identifier:  ? PAC:27445181
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG031797 0.5kb upstream 0.5kb upstream 19885 true scaffold_7: 6967380-6987264 Theobroma cacao
Thecc1EG031797 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6967380-6967879 Theobroma cacao
Thecc1EG031797 0.5kb downstream 0.5kb downstream 19885 true scaffold_7: 6967880-6987764 Theobroma cacao
Thecc1EG031797 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6987265-6987764 Theobroma cacao
Thecc1EG031797 1.0kb upstream 1.0kb upstream 20385 true scaffold_7: 6966880-6987264 Theobroma cacao
Thecc1EG031797 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6966880-6967879 Theobroma cacao
Thecc1EG031797 1.0kb downstream 1.0kb downstream 20385 true scaffold_7: 6967880-6988264 Theobroma cacao
Thecc1EG031797 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6987265-6988264 Theobroma cacao
Thecc1EG031797 2.0kb upstream 2.0kb upstream 21385 true scaffold_7: 6965880-6987264 Theobroma cacao
Thecc1EG031797 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6965880-6967879 Theobroma cacao
Thecc1EG031797 2.0kb downstream 2.0kb downstream 21385 true scaffold_7: 6967880-6989264 Theobroma cacao
Thecc1EG031797 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6987265-6989264 Theobroma cacao
Thecc1EG031797 5.0kb upstream 5.0kb upstream 24385 true scaffold_7: 6962880-6987264 Theobroma cacao
Thecc1EG031797 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6962880-6967879 Theobroma cacao
Thecc1EG031797 5.0kb downstream 5.0kb downstream 24385 true scaffold_7: 6967880-6992264 Theobroma cacao
Thecc1EG031797 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6987265-6992264 Theobroma cacao
Thecc1EG031797 10.0kb upstream 10.0kb upstream 29385 true scaffold_7: 6957880-6987264 Theobroma cacao
Thecc1EG031797 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6957880-6967879 Theobroma cacao
Thecc1EG031797 10.0kb downstream 10.0kb downstream 29385 true scaffold_7: 6967880-6997264 Theobroma cacao
Thecc1EG031797 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6987265-6997264 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841052 5264 Brassicales-Malvales View MSA
124322831 5266 SBM View MSA
124254257 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain