Gene : Thecc1EG031777 T. cacao v1.1
Defline:  (1 of 1) PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Genomic Order:  1024
Name:  ? Thecc1EG031777 Secondary Identifier:  ? PAC:27444269
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG031777 0.5kb upstream 0.5kb upstream 13505 true scaffold_7: 6800544-6814048 Theobroma cacao
Thecc1EG031777 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6800544-6801043 Theobroma cacao
Thecc1EG031777 0.5kb downstream 0.5kb downstream 13505 true scaffold_7: 6801044-6814548 Theobroma cacao
Thecc1EG031777 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6814049-6814548 Theobroma cacao
Thecc1EG031777 1.0kb upstream 1.0kb upstream 14005 true scaffold_7: 6800044-6814048 Theobroma cacao
Thecc1EG031777 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6800044-6801043 Theobroma cacao
Thecc1EG031777 1.0kb downstream 1.0kb downstream 14005 true scaffold_7: 6801044-6815048 Theobroma cacao
Thecc1EG031777 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6814049-6815048 Theobroma cacao
Thecc1EG031777 2.0kb upstream 2.0kb upstream 15005 true scaffold_7: 6799044-6814048 Theobroma cacao
Thecc1EG031777 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6799044-6801043 Theobroma cacao
Thecc1EG031777 2.0kb downstream 2.0kb downstream 15005 true scaffold_7: 6801044-6816048 Theobroma cacao
Thecc1EG031777 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6814049-6816048 Theobroma cacao
Thecc1EG031777 5.0kb upstream 5.0kb upstream 18005 true scaffold_7: 6796044-6814048 Theobroma cacao
Thecc1EG031777 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6796044-6801043 Theobroma cacao
Thecc1EG031777 5.0kb downstream 5.0kb downstream 18005 true scaffold_7: 6801044-6819048 Theobroma cacao
Thecc1EG031777 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6814049-6819048 Theobroma cacao
Thecc1EG031777 10.0kb upstream 10.0kb upstream 23005 true scaffold_7: 6791044-6814048 Theobroma cacao
Thecc1EG031777 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6791044-6801043 Theobroma cacao
Thecc1EG031777 10.0kb downstream 10.0kb downstream 23005 true scaffold_7: 6801044-6824048 Theobroma cacao
Thecc1EG031777 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6814049-6824048 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
123836068 5264 Brassicales-Malvales View MSA
124347422 5266 SBM View MSA
124244841 5268 Malvidae View MSA
124074351 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain