Gene : Pavir.4NG173100 P. virgatum v4.1
Defline:  (1 of 2) PTHR11558//PTHR11558:SF29 - SPERMIDINE/SPERMINE SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1623
Name:  ? Pavir.4NG173100 Secondary Identifier:  ? PAC:37681679
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum BSUBPOLYAMSYN-PWY Panicum virgatum pathologic  
Pvirgatum POLYAMINSYN3-PWY Panicum virgatum pathologic  
Pvirgatum PWY-7528 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.4NG173100 0.5kb upstream 0.5kb upstream 8228 true Chr04N: 31101654-31109881 Panicum virgatum
Pavir.4NG173100 0.5kb upstream 0.5kb upstream 500 false Chr04N: 31109382-31109881 Panicum virgatum
Pavir.4NG173100 0.5kb downstream 0.5kb downstream 8228 true Chr04N: 31101154-31109381 Panicum virgatum
Pavir.4NG173100 0.5kb downstream 0.5kb downstream 500 false Chr04N: 31101154-31101653 Panicum virgatum
Pavir.4NG173100 1.0kb upstream 1.0kb upstream 8728 true Chr04N: 31101654-31110381 Panicum virgatum
Pavir.4NG173100 1.0kb upstream 1.0kb upstream 1000 false Chr04N: 31109382-31110381 Panicum virgatum
Pavir.4NG173100 1.0kb downstream 1.0kb downstream 8728 true Chr04N: 31100654-31109381 Panicum virgatum
Pavir.4NG173100 1.0kb downstream 1.0kb downstream 1000 false Chr04N: 31100654-31101653 Panicum virgatum
Pavir.4NG173100 2.0kb upstream 2.0kb upstream 9728 true Chr04N: 31101654-31111381 Panicum virgatum
Pavir.4NG173100 2.0kb upstream 2.0kb upstream 2000 false Chr04N: 31109382-31111381 Panicum virgatum
Pavir.4NG173100 2.0kb downstream 2.0kb downstream 9728 true Chr04N: 31099654-31109381 Panicum virgatum
Pavir.4NG173100 2.0kb downstream 2.0kb downstream 2000 false Chr04N: 31099654-31101653 Panicum virgatum
Pavir.4NG173100 5.0kb upstream 5.0kb upstream 12728 true Chr04N: 31101654-31114381 Panicum virgatum
Pavir.4NG173100 5.0kb upstream 5.0kb upstream 5000 false Chr04N: 31109382-31114381 Panicum virgatum
Pavir.4NG173100 5.0kb downstream 5.0kb downstream 12728 true Chr04N: 31096654-31109381 Panicum virgatum
Pavir.4NG173100 5.0kb downstream 5.0kb downstream 5000 false Chr04N: 31096654-31101653 Panicum virgatum
Pavir.4NG173100 10.0kb upstream 10.0kb upstream 17728 true Chr04N: 31101654-31119381 Panicum virgatum
Pavir.4NG173100 10.0kb upstream 10.0kb upstream 10000 false Chr04N: 31109382-31119381 Panicum virgatum
Pavir.4NG173100 10.0kb downstream 10.0kb downstream 17728 true Chr04N: 31091654-31109381 Panicum virgatum
Pavir.4NG173100 10.0kb downstream 10.0kb downstream 10000 false Chr04N: 31091654-31101653 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187553 5267 Panicoideae View MSA
124577208 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain