Gene : Thecc1EG032159 T. cacao v1.1
Defline:  (1 of 1) PTHR11766:SF0 - TYROSINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  1265
Name:  ? Thecc1EG032159 Secondary Identifier:  ? PAC:27445856
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG032159 0.5kb upstream 0.5kb upstream 8464 true scaffold_7: 9230606-9239069 Theobroma cacao
Thecc1EG032159 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9238570-9239069 Theobroma cacao
Thecc1EG032159 0.5kb downstream 0.5kb downstream 8464 true scaffold_7: 9230106-9238569 Theobroma cacao
Thecc1EG032159 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9230106-9230605 Theobroma cacao
Thecc1EG032159 1.0kb upstream 1.0kb upstream 8964 true scaffold_7: 9230606-9239569 Theobroma cacao
Thecc1EG032159 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9238570-9239569 Theobroma cacao
Thecc1EG032159 1.0kb downstream 1.0kb downstream 8964 true scaffold_7: 9229606-9238569 Theobroma cacao
Thecc1EG032159 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9229606-9230605 Theobroma cacao
Thecc1EG032159 2.0kb upstream 2.0kb upstream 9964 true scaffold_7: 9230606-9240569 Theobroma cacao
Thecc1EG032159 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9238570-9240569 Theobroma cacao
Thecc1EG032159 2.0kb downstream 2.0kb downstream 9964 true scaffold_7: 9228606-9238569 Theobroma cacao
Thecc1EG032159 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9228606-9230605 Theobroma cacao
Thecc1EG032159 5.0kb upstream 5.0kb upstream 12964 true scaffold_7: 9230606-9243569 Theobroma cacao
Thecc1EG032159 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9238570-9243569 Theobroma cacao
Thecc1EG032159 5.0kb downstream 5.0kb downstream 12964 true scaffold_7: 9225606-9238569 Theobroma cacao
Thecc1EG032159 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9225606-9230605 Theobroma cacao
Thecc1EG032159 10.0kb upstream 10.0kb upstream 17964 true scaffold_7: 9230606-9248569 Theobroma cacao
Thecc1EG032159 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9238570-9248569 Theobroma cacao
Thecc1EG032159 10.0kb downstream 10.0kb downstream 17964 true scaffold_7: 9220606-9238569 Theobroma cacao
Thecc1EG032159 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9220606-9230605 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830850 5264 Brassicales-Malvales View MSA
124350440 5266 SBM View MSA
124241597 5268 Malvidae View MSA
124066531 5270 Rosid View MSA
123740976 5271 Pentapetalae View MSA
122788187 5272 Eudicot View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain