Gene : Thecc1EG032105 T. cacao v1.1
Defline:  (1 of 6) KOG2930 - SCF ubiquitin ligase, Rbx1 component Genomic Order:  1230
Name:  ? Thecc1EG032105 Secondary Identifier:  ? PAC:27445422
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG032105 0.5kb upstream 0.5kb upstream 1567 true scaffold_7: 8927971-8929537 Theobroma cacao
Thecc1EG032105 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 8927971-8928470 Theobroma cacao
Thecc1EG032105 0.5kb downstream 0.5kb downstream 1567 true scaffold_7: 8928471-8930037 Theobroma cacao
Thecc1EG032105 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 8929538-8930037 Theobroma cacao
Thecc1EG032105 1.0kb upstream 1.0kb upstream 2067 true scaffold_7: 8927471-8929537 Theobroma cacao
Thecc1EG032105 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 8927471-8928470 Theobroma cacao
Thecc1EG032105 1.0kb downstream 1.0kb downstream 2067 true scaffold_7: 8928471-8930537 Theobroma cacao
Thecc1EG032105 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 8929538-8930537 Theobroma cacao
Thecc1EG032105 2.0kb upstream 2.0kb upstream 3067 true scaffold_7: 8926471-8929537 Theobroma cacao
Thecc1EG032105 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 8926471-8928470 Theobroma cacao
Thecc1EG032105 2.0kb downstream 2.0kb downstream 3067 true scaffold_7: 8928471-8931537 Theobroma cacao
Thecc1EG032105 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 8929538-8931537 Theobroma cacao
Thecc1EG032105 5.0kb upstream 5.0kb upstream 6067 true scaffold_7: 8923471-8929537 Theobroma cacao
Thecc1EG032105 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 8923471-8928470 Theobroma cacao
Thecc1EG032105 5.0kb downstream 5.0kb downstream 6067 true scaffold_7: 8928471-8934537 Theobroma cacao
Thecc1EG032105 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 8929538-8934537 Theobroma cacao
Thecc1EG032105 10.0kb upstream 10.0kb upstream 11067 true scaffold_7: 8918471-8929537 Theobroma cacao
Thecc1EG032105 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 8918471-8928470 Theobroma cacao
Thecc1EG032105 10.0kb downstream 10.0kb downstream 11067 true scaffold_7: 8928471-8939537 Theobroma cacao
Thecc1EG032105 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 8929538-8939537 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837858 5264 Brassicales-Malvales View MSA
124347162 5266 SBM View MSA
124254220 5268 Malvidae View MSA
124074172 5270 Rosid View MSA
123753748 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain