Gene : Thecc1EG047064 T. cacao v1.1
Defline:  (1 of 1) PTHR21091//PTHR21091:SF105 - METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED // UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC Genomic Order:  1025
Name:  ? Thecc1EG047064 Secondary Identifier:  ? PAC:27446500
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CHLOROPHYLL-SYN Theobroma cacao pathologic  
Tcacao HEME-BIOSYNTHESIS-II Theobroma cacao pathologic  
Tcacao PWY-5918 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG047064 0.5kb upstream 0.5kb upstream 3901 true scaffold_7: 6817266-6821166 Theobroma cacao
Thecc1EG047064 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6820667-6821166 Theobroma cacao
Thecc1EG047064 0.5kb downstream 0.5kb downstream 3901 true scaffold_7: 6816766-6820666 Theobroma cacao
Thecc1EG047064 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6816766-6817265 Theobroma cacao
Thecc1EG047064 1.0kb upstream 1.0kb upstream 4401 true scaffold_7: 6817266-6821666 Theobroma cacao
Thecc1EG047064 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6820667-6821666 Theobroma cacao
Thecc1EG047064 1.0kb downstream 1.0kb downstream 4401 true scaffold_7: 6816266-6820666 Theobroma cacao
Thecc1EG047064 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6816266-6817265 Theobroma cacao
Thecc1EG047064 2.0kb upstream 2.0kb upstream 5401 true scaffold_7: 6817266-6822666 Theobroma cacao
Thecc1EG047064 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6820667-6822666 Theobroma cacao
Thecc1EG047064 2.0kb downstream 2.0kb downstream 5401 true scaffold_7: 6815266-6820666 Theobroma cacao
Thecc1EG047064 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6815266-6817265 Theobroma cacao
Thecc1EG047064 5.0kb upstream 5.0kb upstream 8401 true scaffold_7: 6817266-6825666 Theobroma cacao
Thecc1EG047064 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6820667-6825666 Theobroma cacao
Thecc1EG047064 5.0kb downstream 5.0kb downstream 8401 true scaffold_7: 6812266-6820666 Theobroma cacao
Thecc1EG047064 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6812266-6817265 Theobroma cacao
Thecc1EG047064 10.0kb upstream 10.0kb upstream 13401 true scaffold_7: 6817266-6830666 Theobroma cacao
Thecc1EG047064 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6820667-6830666 Theobroma cacao
Thecc1EG047064 10.0kb downstream 10.0kb downstream 13401 true scaffold_7: 6807266-6820666 Theobroma cacao
Thecc1EG047064 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6807266-6817265 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833836 5264 Brassicales-Malvales View MSA
124337414 5266 SBM View MSA
124240238 5268 Malvidae View MSA
124050452 5270 Rosid View MSA
123740427 5271 Pentapetalae View MSA
122787220 5272 Eudicot View MSA
122051227 5273 Angiosperm View MSA
121345426 5274 Embryophyte View MSA
123424899 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain