Gene : Thecc1EG033840 T. cacao v1.1
Defline:  (1 of 4) K01176 - alpha-amylase (E3.2.1.1, amyA, malS) Genomic Order:  74
Name:  ? Thecc1EG033840 Secondary Identifier:  ? PAC:27457463
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG033840 0.5kb upstream 0.5kb upstream 2703 true scaffold_8: 405941-408643 Theobroma cacao
Thecc1EG033840 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 405941-406440 Theobroma cacao
Thecc1EG033840 0.5kb downstream 0.5kb downstream 2703 true scaffold_8: 406441-409143 Theobroma cacao
Thecc1EG033840 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 408644-409143 Theobroma cacao
Thecc1EG033840 1.0kb upstream 1.0kb upstream 3203 true scaffold_8: 405441-408643 Theobroma cacao
Thecc1EG033840 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 405441-406440 Theobroma cacao
Thecc1EG033840 1.0kb downstream 1.0kb downstream 3203 true scaffold_8: 406441-409643 Theobroma cacao
Thecc1EG033840 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 408644-409643 Theobroma cacao
Thecc1EG033840 2.0kb upstream 2.0kb upstream 4203 true scaffold_8: 404441-408643 Theobroma cacao
Thecc1EG033840 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 404441-406440 Theobroma cacao
Thecc1EG033840 2.0kb downstream 2.0kb downstream 4203 true scaffold_8: 406441-410643 Theobroma cacao
Thecc1EG033840 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 408644-410643 Theobroma cacao
Thecc1EG033840 5.0kb upstream 5.0kb upstream 7203 true scaffold_8: 401441-408643 Theobroma cacao
Thecc1EG033840 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 401441-406440 Theobroma cacao
Thecc1EG033840 5.0kb downstream 5.0kb downstream 7203 true scaffold_8: 406441-413643 Theobroma cacao
Thecc1EG033840 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 408644-413643 Theobroma cacao
Thecc1EG033840 10.0kb upstream 10.0kb upstream 12203 true scaffold_8: 396441-408643 Theobroma cacao
Thecc1EG033840 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 396441-406440 Theobroma cacao
Thecc1EG033840 10.0kb downstream 10.0kb downstream 12203 true scaffold_8: 406441-418643 Theobroma cacao
Thecc1EG033840 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 408644-418643 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032025 5273 Angiosperm View MSA
123822150 5264 Brassicales-Malvales Singleton cluster - no MSA
124318299 5266 SBM Singleton cluster - no MSA
124166959 5268 Malvidae Singleton cluster - no MSA
123890507 5270 Rosid Singleton cluster - no MSA
123472838 5271 Pentapetalae Singleton cluster - no MSA
122508123 5272 Eudicot Singleton cluster - no MSA
121300971 5274 Embryophyte View MSA
123338670 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain