Gene : Thecc1EG034356 T. cacao v1.1
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  549
Name:  ? Thecc1EG034356 Secondary Identifier:  ? PAC:27458841
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6441 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG034356 0.5kb upstream 0.5kb upstream 3565 true scaffold_8: 2583112-2586676 Theobroma cacao
Thecc1EG034356 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 2586177-2586676 Theobroma cacao
Thecc1EG034356 0.5kb downstream 0.5kb downstream 3565 true scaffold_8: 2582612-2586176 Theobroma cacao
Thecc1EG034356 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 2582612-2583111 Theobroma cacao
Thecc1EG034356 1.0kb upstream 1.0kb upstream 4065 true scaffold_8: 2583112-2587176 Theobroma cacao
Thecc1EG034356 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 2586177-2587176 Theobroma cacao
Thecc1EG034356 1.0kb downstream 1.0kb downstream 4065 true scaffold_8: 2582112-2586176 Theobroma cacao
Thecc1EG034356 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 2582112-2583111 Theobroma cacao
Thecc1EG034356 2.0kb upstream 2.0kb upstream 5065 true scaffold_8: 2583112-2588176 Theobroma cacao
Thecc1EG034356 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 2586177-2588176 Theobroma cacao
Thecc1EG034356 2.0kb downstream 2.0kb downstream 5065 true scaffold_8: 2581112-2586176 Theobroma cacao
Thecc1EG034356 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 2581112-2583111 Theobroma cacao
Thecc1EG034356 5.0kb upstream 5.0kb upstream 8065 true scaffold_8: 2583112-2591176 Theobroma cacao
Thecc1EG034356 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 2586177-2591176 Theobroma cacao
Thecc1EG034356 5.0kb downstream 5.0kb downstream 8065 true scaffold_8: 2578112-2586176 Theobroma cacao
Thecc1EG034356 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 2578112-2583111 Theobroma cacao
Thecc1EG034356 10.0kb upstream 10.0kb upstream 13065 true scaffold_8: 2583112-2596176 Theobroma cacao
Thecc1EG034356 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 2586177-2596176 Theobroma cacao
Thecc1EG034356 10.0kb downstream 10.0kb downstream 13065 true scaffold_8: 2573112-2586176 Theobroma cacao
Thecc1EG034356 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 2573112-2583111 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829326 5264 Brassicales-Malvales View MSA
124336608 5266 SBM View MSA
124249535 5268 Malvidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain