Gene : Thecc1EG034424 T. cacao v1.1
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  612
Name:  ? Thecc1EG034424 Secondary Identifier:  ? PAC:27457201
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ANAEROFRUCAT-PWY Theobroma cacao pathologic  
Tcacao ANAGLYCOLYSIS-PWY Theobroma cacao pathologic  
Tcacao CALVIN-PWY Theobroma cacao pathologic  
Tcacao GLUCONEO-PWY Theobroma cacao pathologic  
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-1042 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY66-399 Theobroma cacao pathologic  
Tcacao SUCSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG034424 0.5kb upstream 0.5kb upstream 4034 true scaffold_8: 2904876-2908909 Theobroma cacao
Thecc1EG034424 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 2908410-2908909 Theobroma cacao
Thecc1EG034424 0.5kb downstream 0.5kb downstream 4034 true scaffold_8: 2904376-2908409 Theobroma cacao
Thecc1EG034424 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 2904376-2904875 Theobroma cacao
Thecc1EG034424 1.0kb upstream 1.0kb upstream 4534 true scaffold_8: 2904876-2909409 Theobroma cacao
Thecc1EG034424 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 2908410-2909409 Theobroma cacao
Thecc1EG034424 1.0kb downstream 1.0kb downstream 4534 true scaffold_8: 2903876-2908409 Theobroma cacao
Thecc1EG034424 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 2903876-2904875 Theobroma cacao
Thecc1EG034424 2.0kb upstream 2.0kb upstream 5534 true scaffold_8: 2904876-2910409 Theobroma cacao
Thecc1EG034424 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 2908410-2910409 Theobroma cacao
Thecc1EG034424 2.0kb downstream 2.0kb downstream 5534 true scaffold_8: 2902876-2908409 Theobroma cacao
Thecc1EG034424 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 2902876-2904875 Theobroma cacao
Thecc1EG034424 5.0kb upstream 5.0kb upstream 8534 true scaffold_8: 2904876-2913409 Theobroma cacao
Thecc1EG034424 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 2908410-2913409 Theobroma cacao
Thecc1EG034424 5.0kb downstream 5.0kb downstream 8534 true scaffold_8: 2899876-2908409 Theobroma cacao
Thecc1EG034424 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 2899876-2904875 Theobroma cacao
Thecc1EG034424 10.0kb upstream 10.0kb upstream 13534 true scaffold_8: 2904876-2918409 Theobroma cacao
Thecc1EG034424 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 2908410-2918409 Theobroma cacao
Thecc1EG034424 10.0kb downstream 10.0kb downstream 13534 true scaffold_8: 2894876-2908409 Theobroma cacao
Thecc1EG034424 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 2894876-2904875 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain