Gene : Thecc1EG034858 T. cacao v1.1
Defline:  (1 of 1) PTHR11778//PTHR11778:SF0 - SERYL-TRNA SYNTHETASE // SERINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  992
Name:  ? Thecc1EG034858 Secondary Identifier:  ? PAC:27458639
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG034858 0.5kb upstream 0.5kb upstream 5065 true scaffold_8: 5104787-5109851 Theobroma cacao
Thecc1EG034858 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5109352-5109851 Theobroma cacao
Thecc1EG034858 0.5kb downstream 0.5kb downstream 5065 true scaffold_8: 5104287-5109351 Theobroma cacao
Thecc1EG034858 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5104287-5104786 Theobroma cacao
Thecc1EG034858 1.0kb upstream 1.0kb upstream 5565 true scaffold_8: 5104787-5110351 Theobroma cacao
Thecc1EG034858 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5109352-5110351 Theobroma cacao
Thecc1EG034858 1.0kb downstream 1.0kb downstream 5565 true scaffold_8: 5103787-5109351 Theobroma cacao
Thecc1EG034858 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5103787-5104786 Theobroma cacao
Thecc1EG034858 2.0kb upstream 2.0kb upstream 6565 true scaffold_8: 5104787-5111351 Theobroma cacao
Thecc1EG034858 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5109352-5111351 Theobroma cacao
Thecc1EG034858 2.0kb downstream 2.0kb downstream 6565 true scaffold_8: 5102787-5109351 Theobroma cacao
Thecc1EG034858 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5102787-5104786 Theobroma cacao
Thecc1EG034858 5.0kb upstream 5.0kb upstream 9565 true scaffold_8: 5104787-5114351 Theobroma cacao
Thecc1EG034858 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5109352-5114351 Theobroma cacao
Thecc1EG034858 5.0kb downstream 5.0kb downstream 9565 true scaffold_8: 5099787-5109351 Theobroma cacao
Thecc1EG034858 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5099787-5104786 Theobroma cacao
Thecc1EG034858 10.0kb upstream 10.0kb upstream 14565 true scaffold_8: 5104787-5119351 Theobroma cacao
Thecc1EG034858 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5109352-5119351 Theobroma cacao
Thecc1EG034858 10.0kb downstream 10.0kb downstream 14565 true scaffold_8: 5094787-5109351 Theobroma cacao
Thecc1EG034858 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5094787-5104786 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833233 5264 Brassicales-Malvales View MSA
124340826 5266 SBM View MSA
124238864 5268 Malvidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain