Gene : Thecc1EG035075 T. cacao v1.1
Defline:  (1 of 1) PTHR31423//PTHR31423:SF3 - FAMILY NOT NAMED // PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  1180
Name:  ? Thecc1EG035075 Secondary Identifier:  ? PAC:27458197
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG035075 0.5kb upstream 0.5kb upstream 5239 true scaffold_8: 6374870-6380108 Theobroma cacao
Thecc1EG035075 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 6379609-6380108 Theobroma cacao
Thecc1EG035075 0.5kb downstream 0.5kb downstream 5239 true scaffold_8: 6374370-6379608 Theobroma cacao
Thecc1EG035075 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 6374370-6374869 Theobroma cacao
Thecc1EG035075 1.0kb upstream 1.0kb upstream 5739 true scaffold_8: 6374870-6380608 Theobroma cacao
Thecc1EG035075 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 6379609-6380608 Theobroma cacao
Thecc1EG035075 1.0kb downstream 1.0kb downstream 5739 true scaffold_8: 6373870-6379608 Theobroma cacao
Thecc1EG035075 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 6373870-6374869 Theobroma cacao
Thecc1EG035075 2.0kb upstream 2.0kb upstream 6739 true scaffold_8: 6374870-6381608 Theobroma cacao
Thecc1EG035075 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 6379609-6381608 Theobroma cacao
Thecc1EG035075 2.0kb downstream 2.0kb downstream 6739 true scaffold_8: 6372870-6379608 Theobroma cacao
Thecc1EG035075 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 6372870-6374869 Theobroma cacao
Thecc1EG035075 5.0kb upstream 5.0kb upstream 9739 true scaffold_8: 6374870-6384608 Theobroma cacao
Thecc1EG035075 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 6379609-6384608 Theobroma cacao
Thecc1EG035075 5.0kb downstream 5.0kb downstream 9739 true scaffold_8: 6369870-6379608 Theobroma cacao
Thecc1EG035075 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 6369870-6374869 Theobroma cacao
Thecc1EG035075 10.0kb upstream 10.0kb upstream 14739 true scaffold_8: 6374870-6389608 Theobroma cacao
Thecc1EG035075 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 6379609-6389608 Theobroma cacao
Thecc1EG035075 10.0kb downstream 10.0kb downstream 14739 true scaffold_8: 6364870-6379608 Theobroma cacao
Thecc1EG035075 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 6364870-6374869 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836180 5264 Brassicales-Malvales View MSA
124337596 5266 SBM View MSA
124237844 5268 Malvidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain