Gene : Thecc1EG034999 T. cacao v1.1
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  1116
Name:  ? Thecc1EG034999 Secondary Identifier:  ? PAC:27459171
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLYSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-2161 Theobroma cacao pathologic  
Tcacao PWY-3841 Theobroma cacao pathologic  
Tcacao SER-GLYSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG034999 0.5kb upstream 0.5kb upstream 6574 true scaffold_8: 5908470-5915043 Theobroma cacao
Thecc1EG034999 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5914544-5915043 Theobroma cacao
Thecc1EG034999 0.5kb downstream 0.5kb downstream 6574 true scaffold_8: 5907970-5914543 Theobroma cacao
Thecc1EG034999 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5907970-5908469 Theobroma cacao
Thecc1EG034999 1.0kb upstream 1.0kb upstream 7074 true scaffold_8: 5908470-5915543 Theobroma cacao
Thecc1EG034999 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5914544-5915543 Theobroma cacao
Thecc1EG034999 1.0kb downstream 1.0kb downstream 7074 true scaffold_8: 5907470-5914543 Theobroma cacao
Thecc1EG034999 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5907470-5908469 Theobroma cacao
Thecc1EG034999 2.0kb upstream 2.0kb upstream 8074 true scaffold_8: 5908470-5916543 Theobroma cacao
Thecc1EG034999 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5914544-5916543 Theobroma cacao
Thecc1EG034999 2.0kb downstream 2.0kb downstream 8074 true scaffold_8: 5906470-5914543 Theobroma cacao
Thecc1EG034999 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5906470-5908469 Theobroma cacao
Thecc1EG034999 5.0kb upstream 5.0kb upstream 11074 true scaffold_8: 5908470-5919543 Theobroma cacao
Thecc1EG034999 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5914544-5919543 Theobroma cacao
Thecc1EG034999 5.0kb downstream 5.0kb downstream 11074 true scaffold_8: 5903470-5914543 Theobroma cacao
Thecc1EG034999 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5903470-5908469 Theobroma cacao
Thecc1EG034999 10.0kb upstream 10.0kb upstream 16074 true scaffold_8: 5908470-5924543 Theobroma cacao
Thecc1EG034999 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5914544-5924543 Theobroma cacao
Thecc1EG034999 10.0kb downstream 10.0kb downstream 16074 true scaffold_8: 5898470-5914543 Theobroma cacao
Thecc1EG034999 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5898470-5908469 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain