Gene : Thecc1EG035835 T. cacao v1.1
Defline:  (1 of 2) PTHR11993//PTHR11993:SF10 - NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT // NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL Genomic Order:  1620
Name:  ? Thecc1EG035835 Secondary Identifier:  ? PAC:27459347
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5083 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG035835 0.5kb upstream 0.5kb upstream 2298 true scaffold_8: 12793262-12795559 Theobroma cacao
Thecc1EG035835 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12793262-12793761 Theobroma cacao
Thecc1EG035835 0.5kb downstream 0.5kb downstream 2298 true scaffold_8: 12793762-12796059 Theobroma cacao
Thecc1EG035835 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12795560-12796059 Theobroma cacao
Thecc1EG035835 1.0kb upstream 1.0kb upstream 2798 true scaffold_8: 12792762-12795559 Theobroma cacao
Thecc1EG035835 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12792762-12793761 Theobroma cacao
Thecc1EG035835 1.0kb downstream 1.0kb downstream 2798 true scaffold_8: 12793762-12796559 Theobroma cacao
Thecc1EG035835 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12795560-12796559 Theobroma cacao
Thecc1EG035835 2.0kb upstream 2.0kb upstream 3798 true scaffold_8: 12791762-12795559 Theobroma cacao
Thecc1EG035835 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12791762-12793761 Theobroma cacao
Thecc1EG035835 2.0kb downstream 2.0kb downstream 3798 true scaffold_8: 12793762-12797559 Theobroma cacao
Thecc1EG035835 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12795560-12797559 Theobroma cacao
Thecc1EG035835 5.0kb upstream 5.0kb upstream 6798 true scaffold_8: 12788762-12795559 Theobroma cacao
Thecc1EG035835 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12788762-12793761 Theobroma cacao
Thecc1EG035835 5.0kb downstream 5.0kb downstream 6798 true scaffold_8: 12793762-12800559 Theobroma cacao
Thecc1EG035835 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12795560-12800559 Theobroma cacao
Thecc1EG035835 10.0kb upstream 10.0kb upstream 11798 true scaffold_8: 12783762-12795559 Theobroma cacao
Thecc1EG035835 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12783762-12793761 Theobroma cacao
Thecc1EG035835 10.0kb downstream 10.0kb downstream 11798 true scaffold_8: 12793762-12805559 Theobroma cacao
Thecc1EG035835 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12795560-12805559 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026692 5273 Angiosperm View MSA
123822477 5264 Brassicales-Malvales Singleton cluster - no MSA
124318611 5266 SBM Singleton cluster - no MSA
124248815 5268 Malvidae View MSA
124070566 5270 Rosid View MSA
123750538 5271 Pentapetalae View MSA
122773711 5272 Eudicot View MSA
121350081 5274 Embryophyte View MSA
123381572 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain