Gene : Thecc1EG036421 T. cacao v1.1
Defline:  (1 of 49) PF14227 - gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  1874
Name:  ? Thecc1EG036421 Secondary Identifier:  ? PAC:27459058
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG036421 0.5kb upstream 0.5kb upstream 5448 true scaffold_8: 18898680-18904127 Theobroma cacao
Thecc1EG036421 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 18903628-18904127 Theobroma cacao
Thecc1EG036421 0.5kb downstream 0.5kb downstream 5448 true scaffold_8: 18898180-18903627 Theobroma cacao
Thecc1EG036421 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 18898180-18898679 Theobroma cacao
Thecc1EG036421 1.0kb upstream 1.0kb upstream 5948 true scaffold_8: 18898680-18904627 Theobroma cacao
Thecc1EG036421 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 18903628-18904627 Theobroma cacao
Thecc1EG036421 1.0kb downstream 1.0kb downstream 5948 true scaffold_8: 18897680-18903627 Theobroma cacao
Thecc1EG036421 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 18897680-18898679 Theobroma cacao
Thecc1EG036421 2.0kb upstream 2.0kb upstream 6948 true scaffold_8: 18898680-18905627 Theobroma cacao
Thecc1EG036421 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 18903628-18905627 Theobroma cacao
Thecc1EG036421 2.0kb downstream 2.0kb downstream 6948 true scaffold_8: 18896680-18903627 Theobroma cacao
Thecc1EG036421 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 18896680-18898679 Theobroma cacao
Thecc1EG036421 5.0kb upstream 5.0kb upstream 9948 true scaffold_8: 18898680-18908627 Theobroma cacao
Thecc1EG036421 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 18903628-18908627 Theobroma cacao
Thecc1EG036421 5.0kb downstream 5.0kb downstream 9948 true scaffold_8: 18893680-18903627 Theobroma cacao
Thecc1EG036421 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 18893680-18898679 Theobroma cacao
Thecc1EG036421 10.0kb upstream 10.0kb upstream 14948 true scaffold_8: 18898680-18913627 Theobroma cacao
Thecc1EG036421 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 18903628-18913627 Theobroma cacao
Thecc1EG036421 10.0kb downstream 10.0kb downstream 14948 true scaffold_8: 18888680-18903627 Theobroma cacao
Thecc1EG036421 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 18888680-18898679 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain