Gene : Thecc1EG036851 T. cacao v1.1
Defline:  (1 of 1) PF00060//PF00497//PF01094//PF13458 - Ligand-gated ion channel (Lig_chan) // Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3) // Receptor family ligand binding region (ANF_receptor) // Periplasmic binding protein (Peripla_BP_6) Genomic Order:  102
Name:  ? Thecc1EG036851 Secondary Identifier:  ? PAC:27426896
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG036851 0.5kb upstream 0.5kb upstream 5883 true scaffold_9: 546469-552351 Theobroma cacao
Thecc1EG036851 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 551852-552351 Theobroma cacao
Thecc1EG036851 0.5kb downstream 0.5kb downstream 5883 true scaffold_9: 545969-551851 Theobroma cacao
Thecc1EG036851 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 545969-546468 Theobroma cacao
Thecc1EG036851 1.0kb upstream 1.0kb upstream 6383 true scaffold_9: 546469-552851 Theobroma cacao
Thecc1EG036851 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 551852-552851 Theobroma cacao
Thecc1EG036851 1.0kb downstream 1.0kb downstream 6383 true scaffold_9: 545469-551851 Theobroma cacao
Thecc1EG036851 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 545469-546468 Theobroma cacao
Thecc1EG036851 2.0kb upstream 2.0kb upstream 7383 true scaffold_9: 546469-553851 Theobroma cacao
Thecc1EG036851 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 551852-553851 Theobroma cacao
Thecc1EG036851 2.0kb downstream 2.0kb downstream 7383 true scaffold_9: 544469-551851 Theobroma cacao
Thecc1EG036851 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 544469-546468 Theobroma cacao
Thecc1EG036851 5.0kb upstream 5.0kb upstream 10383 true scaffold_9: 546469-556851 Theobroma cacao
Thecc1EG036851 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 551852-556851 Theobroma cacao
Thecc1EG036851 5.0kb downstream 5.0kb downstream 10383 true scaffold_9: 541469-551851 Theobroma cacao
Thecc1EG036851 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 541469-546468 Theobroma cacao
Thecc1EG036851 10.0kb upstream 10.0kb upstream 15383 true scaffold_9: 546469-561851 Theobroma cacao
Thecc1EG036851 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 551852-561851 Theobroma cacao
Thecc1EG036851 10.0kb downstream 10.0kb downstream 15383 true scaffold_9: 536469-551851 Theobroma cacao
Thecc1EG036851 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 536469-546468 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835678 5264 Brassicales-Malvales View MSA
124350838 5266 SBM View MSA
124245741 5268 Malvidae View MSA
124071317 5270 Rosid View MSA
123753015 5271 Pentapetalae View MSA
122797408 5272 Eudicot View MSA
122051662 5273 Angiosperm View MSA
121351346 5274 Embryophyte View MSA
123428796 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain