Gene : Thecc1EG037020 T. cacao v1.1
Defline:  (1 of 1) PF12854//PF13041//PF13812//PF14432 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  259
Name:  ? Thecc1EG037020 Secondary Identifier:  ? PAC:27428779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037020 0.5kb upstream 0.5kb upstream 3636 true scaffold_9: 1394816-1398451 Theobroma cacao
Thecc1EG037020 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1397952-1398451 Theobroma cacao
Thecc1EG037020 0.5kb downstream 0.5kb downstream 3636 true scaffold_9: 1394316-1397951 Theobroma cacao
Thecc1EG037020 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1394316-1394815 Theobroma cacao
Thecc1EG037020 1.0kb upstream 1.0kb upstream 4136 true scaffold_9: 1394816-1398951 Theobroma cacao
Thecc1EG037020 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1397952-1398951 Theobroma cacao
Thecc1EG037020 1.0kb downstream 1.0kb downstream 4136 true scaffold_9: 1393816-1397951 Theobroma cacao
Thecc1EG037020 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1393816-1394815 Theobroma cacao
Thecc1EG037020 2.0kb upstream 2.0kb upstream 5136 true scaffold_9: 1394816-1399951 Theobroma cacao
Thecc1EG037020 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1397952-1399951 Theobroma cacao
Thecc1EG037020 2.0kb downstream 2.0kb downstream 5136 true scaffold_9: 1392816-1397951 Theobroma cacao
Thecc1EG037020 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1392816-1394815 Theobroma cacao
Thecc1EG037020 5.0kb upstream 5.0kb upstream 8136 true scaffold_9: 1394816-1402951 Theobroma cacao
Thecc1EG037020 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1397952-1402951 Theobroma cacao
Thecc1EG037020 5.0kb downstream 5.0kb downstream 8136 true scaffold_9: 1389816-1397951 Theobroma cacao
Thecc1EG037020 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1389816-1394815 Theobroma cacao
Thecc1EG037020 10.0kb upstream 10.0kb upstream 13136 true scaffold_9: 1394816-1407951 Theobroma cacao
Thecc1EG037020 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1397952-1407951 Theobroma cacao
Thecc1EG037020 10.0kb downstream 10.0kb downstream 13136 true scaffold_9: 1384816-1397951 Theobroma cacao
Thecc1EG037020 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1384816-1394815 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825869 5264 Brassicales-Malvales View MSA
124347410 5266 SBM View MSA
124245481 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain