Gene : Thecc1EG037221 T. cacao v1.1
Defline:  (1 of 1) PTHR10055//PTHR10055:SF9 - TRYPTOPHANYL-TRNA SYNTHETASE // PROTEIN OVULE ABORTION 4 Genomic Order:  448
Name:  ? Thecc1EG037221 Secondary Identifier:  ? PAC:27427126
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037221 0.5kb upstream 0.5kb upstream 9825 true scaffold_9: 2405240-2415064 Theobroma cacao
Thecc1EG037221 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2405240-2405739 Theobroma cacao
Thecc1EG037221 0.5kb downstream 0.5kb downstream 9825 true scaffold_9: 2405740-2415564 Theobroma cacao
Thecc1EG037221 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2415065-2415564 Theobroma cacao
Thecc1EG037221 1.0kb upstream 1.0kb upstream 10325 true scaffold_9: 2404740-2415064 Theobroma cacao
Thecc1EG037221 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2404740-2405739 Theobroma cacao
Thecc1EG037221 1.0kb downstream 1.0kb downstream 10325 true scaffold_9: 2405740-2416064 Theobroma cacao
Thecc1EG037221 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2415065-2416064 Theobroma cacao
Thecc1EG037221 2.0kb upstream 2.0kb upstream 11325 true scaffold_9: 2403740-2415064 Theobroma cacao
Thecc1EG037221 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2403740-2405739 Theobroma cacao
Thecc1EG037221 2.0kb downstream 2.0kb downstream 11325 true scaffold_9: 2405740-2417064 Theobroma cacao
Thecc1EG037221 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2415065-2417064 Theobroma cacao
Thecc1EG037221 5.0kb upstream 5.0kb upstream 14325 true scaffold_9: 2400740-2415064 Theobroma cacao
Thecc1EG037221 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2400740-2405739 Theobroma cacao
Thecc1EG037221 5.0kb downstream 5.0kb downstream 14325 true scaffold_9: 2405740-2420064 Theobroma cacao
Thecc1EG037221 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2415065-2420064 Theobroma cacao
Thecc1EG037221 10.0kb upstream 10.0kb upstream 19325 true scaffold_9: 2395740-2415064 Theobroma cacao
Thecc1EG037221 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2395740-2405739 Theobroma cacao
Thecc1EG037221 10.0kb downstream 10.0kb downstream 19325 true scaffold_9: 2405740-2425064 Theobroma cacao
Thecc1EG037221 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2415065-2425064 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830028 5264 Brassicales-Malvales View MSA
124345333 5266 SBM View MSA
124250239 5268 Malvidae View MSA
124063283 5270 Rosid View MSA
123736955 5271 Pentapetalae View MSA
122787950 5272 Eudicot View MSA
122047133 5273 Angiosperm View MSA
121345289 5274 Embryophyte View MSA
123423978 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain