Gene : Thecc1EG037617 T. cacao v1.1
Defline:  (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase Genomic Order:  808
Name:  ? Thecc1EG037617 Secondary Identifier:  ? PAC:27429522
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-5175 Theobroma cacao pathologic  
Tcacao PWY-5946 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037617 0.5kb upstream 0.5kb upstream 6385 true scaffold_9: 4464054-4470438 Theobroma cacao
Thecc1EG037617 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4469939-4470438 Theobroma cacao
Thecc1EG037617 0.5kb downstream 0.5kb downstream 6385 true scaffold_9: 4463554-4469938 Theobroma cacao
Thecc1EG037617 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4463554-4464053 Theobroma cacao
Thecc1EG037617 1.0kb upstream 1.0kb upstream 6885 true scaffold_9: 4464054-4470938 Theobroma cacao
Thecc1EG037617 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4469939-4470938 Theobroma cacao
Thecc1EG037617 1.0kb downstream 1.0kb downstream 6885 true scaffold_9: 4463054-4469938 Theobroma cacao
Thecc1EG037617 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4463054-4464053 Theobroma cacao
Thecc1EG037617 2.0kb upstream 2.0kb upstream 7885 true scaffold_9: 4464054-4471938 Theobroma cacao
Thecc1EG037617 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4469939-4471938 Theobroma cacao
Thecc1EG037617 2.0kb downstream 2.0kb downstream 7885 true scaffold_9: 4462054-4469938 Theobroma cacao
Thecc1EG037617 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4462054-4464053 Theobroma cacao
Thecc1EG037617 5.0kb upstream 5.0kb upstream 10885 true scaffold_9: 4464054-4474938 Theobroma cacao
Thecc1EG037617 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4469939-4474938 Theobroma cacao
Thecc1EG037617 5.0kb downstream 5.0kb downstream 10885 true scaffold_9: 4459054-4469938 Theobroma cacao
Thecc1EG037617 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4459054-4464053 Theobroma cacao
Thecc1EG037617 10.0kb upstream 10.0kb upstream 15885 true scaffold_9: 4464054-4479938 Theobroma cacao
Thecc1EG037617 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4469939-4479938 Theobroma cacao
Thecc1EG037617 10.0kb downstream 10.0kb downstream 15885 true scaffold_9: 4454054-4469938 Theobroma cacao
Thecc1EG037617 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4454054-4464053 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain