Gene : Thecc1EG037603 T. cacao v1.1
Defline:  (1 of 5) PF04827 - Plant transposon protein (Plant_tran) Genomic Order:  797
Name:  ? Thecc1EG037603 Secondary Identifier:  ? PAC:27429280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037603 0.5kb upstream 0.5kb upstream 3252 true scaffold_9: 4371949-4375200 Theobroma cacao
Thecc1EG037603 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4374701-4375200 Theobroma cacao
Thecc1EG037603 0.5kb downstream 0.5kb downstream 3252 true scaffold_9: 4371449-4374700 Theobroma cacao
Thecc1EG037603 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4371449-4371948 Theobroma cacao
Thecc1EG037603 1.0kb upstream 1.0kb upstream 3752 true scaffold_9: 4371949-4375700 Theobroma cacao
Thecc1EG037603 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4374701-4375700 Theobroma cacao
Thecc1EG037603 1.0kb downstream 1.0kb downstream 3752 true scaffold_9: 4370949-4374700 Theobroma cacao
Thecc1EG037603 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4370949-4371948 Theobroma cacao
Thecc1EG037603 2.0kb upstream 2.0kb upstream 4752 true scaffold_9: 4371949-4376700 Theobroma cacao
Thecc1EG037603 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4374701-4376700 Theobroma cacao
Thecc1EG037603 2.0kb downstream 2.0kb downstream 4752 true scaffold_9: 4369949-4374700 Theobroma cacao
Thecc1EG037603 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4369949-4371948 Theobroma cacao
Thecc1EG037603 5.0kb upstream 5.0kb upstream 7752 true scaffold_9: 4371949-4379700 Theobroma cacao
Thecc1EG037603 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4374701-4379700 Theobroma cacao
Thecc1EG037603 5.0kb downstream 5.0kb downstream 7752 true scaffold_9: 4366949-4374700 Theobroma cacao
Thecc1EG037603 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4366949-4371948 Theobroma cacao
Thecc1EG037603 10.0kb upstream 10.0kb upstream 12752 true scaffold_9: 4371949-4384700 Theobroma cacao
Thecc1EG037603 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4374701-4384700 Theobroma cacao
Thecc1EG037603 10.0kb downstream 10.0kb downstream 12752 true scaffold_9: 4361949-4374700 Theobroma cacao
Thecc1EG037603 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4361949-4371948 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833649 5264 Brassicales-Malvales View MSA
124321885 5266 SBM View MSA
124248021 5268 Malvidae View MSA
124072686 5270 Rosid View MSA
123741393 5271 Pentapetalae View MSA
122770042 5272 Eudicot View MSA
122051358 5273 Angiosperm View MSA
121345285 5274 Embryophyte View MSA
123380187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain