Gene : Thecc1EG037739 T. cacao v1.1
Defline:  (1 of 1) PF05970//PF08646 - PIF1-like helicase (PIF1) // Replication factor-A C terminal domain (Rep_fac-A_C) Genomic Order:  922
Name:  ? Thecc1EG037739 Secondary Identifier:  ? PAC:27428536
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037739 0.5kb upstream 0.5kb upstream 6493 true scaffold_9: 5057473-5063965 Theobroma cacao
Thecc1EG037739 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5057473-5057972 Theobroma cacao
Thecc1EG037739 0.5kb downstream 0.5kb downstream 6493 true scaffold_9: 5057973-5064465 Theobroma cacao
Thecc1EG037739 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5063966-5064465 Theobroma cacao
Thecc1EG037739 1.0kb upstream 1.0kb upstream 6993 true scaffold_9: 5056973-5063965 Theobroma cacao
Thecc1EG037739 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5056973-5057972 Theobroma cacao
Thecc1EG037739 1.0kb downstream 1.0kb downstream 6993 true scaffold_9: 5057973-5064965 Theobroma cacao
Thecc1EG037739 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5063966-5064965 Theobroma cacao
Thecc1EG037739 2.0kb upstream 2.0kb upstream 7993 true scaffold_9: 5055973-5063965 Theobroma cacao
Thecc1EG037739 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5055973-5057972 Theobroma cacao
Thecc1EG037739 2.0kb downstream 2.0kb downstream 7993 true scaffold_9: 5057973-5065965 Theobroma cacao
Thecc1EG037739 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5063966-5065965 Theobroma cacao
Thecc1EG037739 5.0kb upstream 5.0kb upstream 10993 true scaffold_9: 5052973-5063965 Theobroma cacao
Thecc1EG037739 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5052973-5057972 Theobroma cacao
Thecc1EG037739 5.0kb downstream 5.0kb downstream 10993 true scaffold_9: 5057973-5068965 Theobroma cacao
Thecc1EG037739 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5063966-5068965 Theobroma cacao
Thecc1EG037739 10.0kb upstream 10.0kb upstream 15993 true scaffold_9: 5047973-5063965 Theobroma cacao
Thecc1EG037739 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5047973-5057972 Theobroma cacao
Thecc1EG037739 10.0kb downstream 10.0kb downstream 15993 true scaffold_9: 5057973-5073965 Theobroma cacao
Thecc1EG037739 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5063966-5073965 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
123822974 5264 Brassicales-Malvales Singleton cluster - no MSA
124319083 5266 SBM Singleton cluster - no MSA
124167671 5268 Malvidae Singleton cluster - no MSA
124051325 5270 Rosid View MSA
123752824 5271 Pentapetalae View MSA
122797633 5272 Eudicot View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain