Gene : Thecc1EG037720 T. cacao v1.1
Defline:  (1 of 1) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  905
Name:  ? Thecc1EG037720 Secondary Identifier:  ? PAC:27425603
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037720 0.5kb upstream 0.5kb upstream 3817 true scaffold_9: 4954180-4957996 Theobroma cacao
Thecc1EG037720 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4957497-4957996 Theobroma cacao
Thecc1EG037720 0.5kb downstream 0.5kb downstream 3817 true scaffold_9: 4953680-4957496 Theobroma cacao
Thecc1EG037720 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4953680-4954179 Theobroma cacao
Thecc1EG037720 1.0kb upstream 1.0kb upstream 4317 true scaffold_9: 4954180-4958496 Theobroma cacao
Thecc1EG037720 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4957497-4958496 Theobroma cacao
Thecc1EG037720 1.0kb downstream 1.0kb downstream 4317 true scaffold_9: 4953180-4957496 Theobroma cacao
Thecc1EG037720 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4953180-4954179 Theobroma cacao
Thecc1EG037720 2.0kb upstream 2.0kb upstream 5317 true scaffold_9: 4954180-4959496 Theobroma cacao
Thecc1EG037720 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4957497-4959496 Theobroma cacao
Thecc1EG037720 2.0kb downstream 2.0kb downstream 5317 true scaffold_9: 4952180-4957496 Theobroma cacao
Thecc1EG037720 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4952180-4954179 Theobroma cacao
Thecc1EG037720 5.0kb upstream 5.0kb upstream 8317 true scaffold_9: 4954180-4962496 Theobroma cacao
Thecc1EG037720 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4957497-4962496 Theobroma cacao
Thecc1EG037720 5.0kb downstream 5.0kb downstream 8317 true scaffold_9: 4949180-4957496 Theobroma cacao
Thecc1EG037720 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4949180-4954179 Theobroma cacao
Thecc1EG037720 10.0kb upstream 10.0kb upstream 13317 true scaffold_9: 4954180-4967496 Theobroma cacao
Thecc1EG037720 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4957497-4967496 Theobroma cacao
Thecc1EG037720 10.0kb downstream 10.0kb downstream 13317 true scaffold_9: 4944180-4957496 Theobroma cacao
Thecc1EG037720 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4944180-4954179 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829828 5264 Brassicales-Malvales View MSA
124344559 5266 SBM View MSA
124246286 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain