Gene : Thecc1EG037978 T. cacao v1.1
Defline:  (1 of 30) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1137
Name:  ? Thecc1EG037978 Secondary Identifier:  ? PAC:27427936
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037978 0.5kb upstream 0.5kb upstream 4097 true scaffold_9: 6358348-6362444 Theobroma cacao
Thecc1EG037978 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6358348-6358847 Theobroma cacao
Thecc1EG037978 0.5kb downstream 0.5kb downstream 4097 true scaffold_9: 6358848-6362944 Theobroma cacao
Thecc1EG037978 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6362445-6362944 Theobroma cacao
Thecc1EG037978 1.0kb upstream 1.0kb upstream 4597 true scaffold_9: 6357848-6362444 Theobroma cacao
Thecc1EG037978 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6357848-6358847 Theobroma cacao
Thecc1EG037978 1.0kb downstream 1.0kb downstream 4597 true scaffold_9: 6358848-6363444 Theobroma cacao
Thecc1EG037978 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6362445-6363444 Theobroma cacao
Thecc1EG037978 2.0kb upstream 2.0kb upstream 5597 true scaffold_9: 6356848-6362444 Theobroma cacao
Thecc1EG037978 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6356848-6358847 Theobroma cacao
Thecc1EG037978 2.0kb downstream 2.0kb downstream 5597 true scaffold_9: 6358848-6364444 Theobroma cacao
Thecc1EG037978 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6362445-6364444 Theobroma cacao
Thecc1EG037978 5.0kb upstream 5.0kb upstream 8597 true scaffold_9: 6353848-6362444 Theobroma cacao
Thecc1EG037978 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6353848-6358847 Theobroma cacao
Thecc1EG037978 5.0kb downstream 5.0kb downstream 8597 true scaffold_9: 6358848-6367444 Theobroma cacao
Thecc1EG037978 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6362445-6367444 Theobroma cacao
Thecc1EG037978 10.0kb upstream 10.0kb upstream 13597 true scaffold_9: 6348848-6362444 Theobroma cacao
Thecc1EG037978 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6348848-6358847 Theobroma cacao
Thecc1EG037978 10.0kb downstream 10.0kb downstream 13597 true scaffold_9: 6358848-6372444 Theobroma cacao
Thecc1EG037978 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6362445-6372444 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832959 5264 Brassicales-Malvales View MSA
124336880 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain